PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01399.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 270aa MW: 30840.5 Da PI: 6.6038 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.5e-10 | 23 | 66 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+l+ +a ++ + +W +Ia++++ gRt++++ ++ Sme2.5_01399.1_g00010.1 23 TWTRFEDKLFEQALVMYSENdieRWQKIANHVP-GRTAEDVMAHY 66 7********************************.********998 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.8e-14 | 119 | 163 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Sme2.5_01399.1_g00010.1 119 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 163 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.35E-12 | 18 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.719 | 19 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 8.9E-9 | 20 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-8 | 23 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.59E-9 | 23 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-7 | 23 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.1 | 112 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-17 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-16 | 115 | 167 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 116 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 116 | 166 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-12 | 119 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 119 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MMYPANNRWM IGDSPAVIHS NSTWTRFEDK LFEQALVMYS ENDIERWQKI ANHVPGRTAE 60 DVMAHYDALV HDVFEIDSGR VEPPSYPDDS FDWESDCKTN QISFGSNKKH EAERKKGTPW 120 TEEEHRLFLI GLDKYGKGDW RSISRNVVVT RTPTQVASHA QKYYLRQQSM KKERKRSSIH 180 DITTAVDTKM VPPQNSLQNQ GGYQNFSFPI YQPSIGPDDQ RSLPDRMNDP HLIISLCSCE 240 QADNTVPAFA SLGYLKRGAT PYSIPGAVIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT012856 | 0.0 | BT012856.1 Lycopersicon esculentum clone 113942F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367246.2 | 1e-151 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 4e-57 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0V0IMW7 | 1e-150 | A0A0V0IMW7_SOLCH; Putative transcription factor DIVARICATA-like | ||||
STRING | Solyc11g006720.1.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-72 | MYB family protein |
Publications ? help Back to Top | |||
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