PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01399.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 270aa    MW: 30840.5 Da    PI: 6.6038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01399.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.5e-102366344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              WT  Ed+l+ +a  ++  +   +W +Ia++++ gRt++++  ++
  Sme2.5_01399.1_g00010.1 23 TWTRFEDKLFEQALVMYSENdieRWQKIANHVP-GRTAEDVMAHY 66
                             7********************************.********998 PP

2Myb_DNA-binding43.85.8e-14119163347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Sme2.5_01399.1_g00010.1 119 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 163
                              8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.35E-121869IPR009057Homeodomain-like
PROSITE profilePS512938.7191973IPR017884SANT domain
SMARTSM007178.9E-92072IPR001005SANT/Myb domain
PfamPF002493.2E-82366IPR001005SANT/Myb domain
CDDcd001675.59E-92366No hitNo description
Gene3DG3DSA:1.10.10.607.7E-72370IPR009057Homeodomain-like
PROSITE profilePS5129422.1112168IPR017930Myb domain
SuperFamilySSF466895.87E-17114169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-16115167IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.0E-11116162IPR009057Homeodomain-like
SMARTSM007177.3E-11116166IPR001005SANT/Myb domain
PfamPF002496.4E-12119163IPR001005SANT/Myb domain
CDDcd001671.09E-9119163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMYPANNRWM IGDSPAVIHS NSTWTRFEDK LFEQALVMYS ENDIERWQKI ANHVPGRTAE  60
DVMAHYDALV HDVFEIDSGR VEPPSYPDDS FDWESDCKTN QISFGSNKKH EAERKKGTPW  120
TEEEHRLFLI GLDKYGKGDW RSISRNVVVT RTPTQVASHA QKYYLRQQSM KKERKRSSIH  180
DITTAVDTKM VPPQNSLQNQ GGYQNFSFPI YQPSIGPDDQ RSLPDRMNDP HLIISLCSCE  240
QADNTVPAFA SLGYLKRGAT PYSIPGAVIP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0128560.0BT012856.1 Lycopersicon esculentum clone 113942F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367246.21e-151PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN64e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0V0IMW71e-150A0A0V0IMW7_SOLCH; Putative transcription factor DIVARICATA-like
STRINGSolyc11g006720.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]