PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01379.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22995.2 Da PI: 6.6234 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.9 | 1.9e-15 | 126 | 181 | 46 | 101 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 k+++e++r d+++sl+yeA +r++dP+yG+vgvi+ l++++ +++ +la++++++ Sme2.5_01379.1_g00008.1 126 RKQVDEHQRADVADSLYYEAYCRIKDPIYGCVGVITVLHEEIYHVQCQLAKVQAQI 181 57899***********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03107 | 3.6E-10 | 9 | 53 | IPR004146 | DC1 |
Gene3D | G3DSA:3.30.60.20 | 1.3E-4 | 14 | 53 | No hit | No description |
SMART | SM00291 | 0.0093 | 21 | 63 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57889 | 3.84E-19 | 30 | 114 | No hit | No description |
Pfam | PF03107 | 7.5E-7 | 77 | 109 | IPR004146 | DC1 |
Gene3D | G3DSA:3.30.60.20 | 1.9E-4 | 80 | 110 | No hit | No description |
PROSITE profile | PS50891 | 9.608 | 81 | 181 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-13 | 127 | 178 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MKYNEISHFS HPQHMLRYEY SEFPFKCDGC KEIGIGSRYK CTICDYDLHM HCAIPSSSIT 60 HPFYKKCSFQ FLSRPPGNVP RYCNACEKDI TGFIYHCRSC GFDLHPCCAK LPMVLDDGEV 120 KLYLYRKQVD EHQRADVADS LYYEAYCRIK DPIYGCVGVI TVLHEEIYHV QCQLAKVQAQ 180 IDLINQNEDY TFDPSFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-163 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-163 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798303.1 | 1e-87 | PREDICTED: uncharacterized protein LOC104244556 | ||||
Refseq | XP_016455398.1 | 1e-87 | PREDICTED: uncharacterized protein LOC107779469 | ||||
TrEMBL | A0A1S3YTA8 | 3e-86 | A0A1S3YTA8_TOBAC; uncharacterized protein LOC107779469 | ||||
TrEMBL | A0A1U7Y593 | 3e-86 | A0A1U7Y593_NICSY; uncharacterized protein LOC104244556 | ||||
STRING | XP_009798303.1 | 4e-87 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4717 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-14 | LBD family protein |