PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01375.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 570aa    MW: 64204.4 Da    PI: 6.1236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01375.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.1e-09446494348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               W++ E ++lv++v ++G g+W+ I r++     +R++ ++k++w+++l
  Sme2.5_01375.1_g00010.1 446 YWSKPEVLKLVEGVSKYGVGRWSDIKRMFFqssAHRSPADLKDKWRNLL 494
                              5****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.234438498IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12439497IPR009057Homeodomain-like
SuperFamilySSF466894.11E-15441497IPR009057Homeodomain-like
SMARTSM007171.8E-10443496IPR001005SANT/Myb domain
CDDcd116603.12E-17445495No hitNo description
PfamPF002492.9E-7446494IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSEMQTSMAS FEYNWKTPNE SAKSSQWEPE QVVSAASVYF ASEEEAIGME QLLAEPEYGD  60
IVDTLLDFNT CAFSVPESYI KEFSASESVV TNNNLGNDLN NLSSFLDGLP NGYDENYCSI  120
SYEDYLLDIE LEEDTPTLDN VTRDVSCIGN VNLENKLADS EQRNCGAHVL KLSDASTLSD  180
HDAVLPDKFE DISTDKLLEV FRKIFGNQTS VADKQWLNSQ MIFGLENKDM SHKNFSFPKC  240
SLDLSENQGA KVLPACRNLL TASTAFASIF NFRTKPRVQH VKRREHIQWN SFKYLSSAAG  300
EIQLDFPDKW DSKESAEENV KCDGRKLGIS KQYLKCKPLR GGFGRQYYHR GAKVSSQGLG  360
KRNSQVGCIQ NSPGLPIEDR LIRREGHLSK DCRTNRVYNG NIHSAEAQDD PSDTFSDQSS  420
DNSSEDDWTI GCETRGTNKD RKHNKYWSKP EVLKLVEGVS KYGVGRWSDI KRMFFQSSAH  480
RSPADLKDKW RNLLRASCRG LQSQRGVDAK KKNGVPSISH HVLARVQELA VIYPYSRKCR  540
SRISPTASLA SSSNVESDNR CFSMNEQNTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340203.10.0PREDICTED: uncharacterized protein LOC102591958 isoform X1
RefseqXP_006340204.10.0PREDICTED: uncharacterized protein LOC102591958 isoform X2
TrEMBLM1AE300.0M1AE30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-21TRF-like 6