PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01351.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 449aa MW: 49667.4 Da PI: 8.7263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01351.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.7e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Sme2.5_01351.1_g00006.1 76 FICEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.42E-6	75	98	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	5.3E-5	76	98	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.42E-6	147	172	No hit	No description
SMART	SM00355	150	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MLGDDSMSNL TSASNEVSIS SSNNRIEIGS ALYPQLQNIQ TQPAPNKKKR NLPGNPDPEA 60 EVVALSPRSL LATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVKKKVYVCP 120 EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVHSDWKAH SKICGTREYR 180 CDCGTLFSRR DSFITHRAFC DALTEESSRT IIPPPNSSTS HHLNLHTLQN FQLKQEQQQQ 240 SNELSSQLFI QNPNSSSSNL FGAPPPHMSA TALLQKAAQI GVNSSSSSGA AANNMSATCI 300 FSPATISSTK TVMVGVGGGD LTSREYRQFE NNNTTNADFV TAGNTSFHDF GASVTPGFME 360 QVHDMQNMMA PCTNFDEGFG GGTHLMRSGK ENNEGLTRDF LGLRAFPHHT DFLNAATTTP 420 AALHHIASAA SFDQHHNQNQ NPNQSPWQN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MLGDDSMSNL TSASNEVSIS SSNNRIEIGS ALYPQLQNIQ TQPAPNKKKR NLPGNPDPEA  60
EVVALSPRSL LATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVKKKVYVCP  120
EPSCVHHHPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVHSDWKAH SKICGTREYR  180
CDCGTLFSRR DSFITHRAFC DALTEESSRT IIPPPNSSTS HHLNLHTLQN FQLKQEQQQQ  240
SNELSSQLFI QNPNSSSSNL FGAPPPHMSA TALLQKAAQI GVNSSSSSGA AANNMSATCI  300
FSPATISSTK TVMVGVGGGD LTSREYRQFE NNNTTNADFV TAGNTSFHDF GASVTPGFME  360
QVHDMQNMMA PCTNFDEGFG GGTHLMRSGK ENNEGLTRDF LGLRAFPHHT DFLNAATTTP  420
AALHHIASAA SFDQHHNQNQ NPNQSPWQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	148	209	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-34	148	209	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457765	1e-145	CU457765.7 S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence.
GenBank	HG975520	1e-145	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351575.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	M1AER7	0.0	M1AER7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400021189	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]