PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01314.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 421aa    MW: 48362.8 Da    PI: 5.2291
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01314.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34201102101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F 
  Sme2.5_01314.1_g00005.1  20 FLLKTYELVDDPYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFL 96 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +g+++ll++i r+k
  Sme2.5_01314.1_g00005.1  97 RGQRHLLKNIYRRK 110
                              ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3813104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3515109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-6016109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-202043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-205870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVSMAMENCN GGSSSSPAPF LLKTYELVDD PYTNPVVSWS HNGRSFVVWN PPEFARDLLP  60
KYFKHNNFSS FIRQLNTYGF RKVDPEQWEF ANEEFLRGQR HLLKNIYRRK PIHSHSATGQ  120
SVAPLTDSER QEYEDEIERL KKENSLLQTS VENQEKFNYE YEFGIKSMEQ RLQNVAHRQG  180
KLISLLAQLL QRPEFSSDLI QCANNNSKKR RLLVSNYLIE EENTTTNSVV APKLDLEMVK  240
KLDSSINFWE RFLYGIRINP IEDQMCDYEH VQSLPVQTAI HEMDTSSDDS GKRNSPIDHS  300
RDIQSSSGFG GGPSSPVISS IYVNLECQLK PSDQSDRIES KTTKVSESVS NSGNDVFWQQ  360
FLTETPGCTE PQEVENKEFN EVTCDIRLTE NHRYWWNHGV NVENLAERMG HLSSPATGQL  420
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-261110921129Heat shock factor protein 1
5d5v_B6e-261110921129Heat shock factor protein 1
5d5v_D6e-261110921129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-111HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348918.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLM1BGI10.0M1BGI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000446830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.13e-81HSF family protein