PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01278.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 396aa    MW: 44513.8 Da    PI: 4.639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01278.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161452745
                             HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             snr   +s+R++g+lKKA+ELSvLCd+++ + +fs++gk
  Sme2.5_01278.1_g00003.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 52
                             788889*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-18159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.647160IPR002100Transcription factor, MADS-box
CDDcd002661.16E-16283No hitNo description
SuperFamilySSF554551.01E-19393IPR002100Transcription factor, MADS-box
PfamPF003197.8E-151456IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-92237IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-93758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPS GKPSVYKSES  60
SSFEDMITKI AEVNPEERAK RKMECLETIK KACKKSDHDV NIGEQLSPGD LTTEDINFLS  120
HSLRIRLSDI EGRLRLWKNL DKIDNIQQLR KLEDSISKSL NEIAKHKYGM SSLIFCNGED  180
IQPSSVQHGM DLPSNFDARK EPNPCSLIHG CDSENTDAYE DLNSFGSSLP SDTGADFQAS  240
SLMQYGINSW QEFYQCSSVH DGNNENMDVY ENLSSYPLGY LEEPSFSFES YTNLVCNKEI  300
EVSKPESKKF IPDEMFLDCE LNQEDIETQF GFTFDVPQVE LMDDQGNIFG CSTKNSSRLP  360
HSDFANIHDS SKPAASGACD NIMLADSLNF LKDPSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168687.10.0PREDICTED: uncharacterized protein LOC102601973
RefseqXP_015168688.10.0PREDICTED: uncharacterized protein LOC102601973
RefseqXP_015168689.10.0PREDICTED: uncharacterized protein LOC102601973
RefseqXP_015168690.10.0PREDICTED: uncharacterized protein LOC102601973
RefseqXP_015168691.10.0PREDICTED: uncharacterized protein LOC102601973
RefseqXP_015168692.10.0PREDICTED: uncharacterized protein LOC102601973
TrEMBLA0A0V0IRG10.0A0A0V0IRG1_SOLCH; Putative ovule protein
STRINGXP_009770375.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1394878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.26e-50AGAMOUS-like 30