PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01247.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 371aa    MW: 41024.8 Da    PI: 7.7778
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01247.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.53.4e-3998158262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s
  Sme2.5_01247.1_g00005.1  98 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGSGRRKNKSVS 158
                              7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3295155IPR003851Zinc finger, Dof-type
PfamPF027013.4E-32100156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.593102156IPR003851Zinc finger, Dof-type
PROSITE patternPS013610104140IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSEVRDPGIK LFGKTILLRV DDLRSSSINT TSHDDKIISE GELTQSNKNR DDFTNSTVDH  60
ELVEPEILSG ISDDTKIKDV DKDPSENSGT EEKVVKKPDK ILPCPRCNSM ETKFCYYNNY  120
NVNQPRHFCK KCQRYWTAGG TMRNVPVGSG RRKNKSVSNS SYRHIMVSDV LQGASGSVLA  180
FGADKPLCDS MASRLDLAEN SIQNGFEQRM LDVCGGKEIG NDRPSEATTL NSTKNGNNST  240
SHDLSWKNFQ AFPPQSHHFP GVLGLILQRH FILWGCTRAS PWTVPWLSPP PSSASPTLGK  300
HSRDESTLNP SNLGKEDTFQ DKDGKKSVVI PKTLRIDDLD EAAKSSSTLG IKNDSANGAR  360
LFKAFNSKVD E
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572747.10.0PREDICTED: cyclic dof factor 3-like
SwissprotQ93ZL51e-68CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A1U8GNC20.0A0A1U8GNC2_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZHM70.0A0A2G2ZHM7_CAPAN; cyclic dof factor 3-like
STRINGXP_009628724.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-68cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]