PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01223.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 580aa    MW: 63617.4 Da    PI: 4.7646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01223.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.82.7e-1391985681374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              lv++L++cAeav++++++la+al+ ++  la ++  +m+++a+yf+eALa+r+++        + p+++ e++ +++l++   f+e
  Sme2.5_01223.1_g00007.1 198 LVHTLMACAEAVQQENFNLADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFYE 273
                              689****************************************************........44666654445555544..4*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++P+lkf+h+taNqaIlea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+++g++La++A+++
  Sme2.5_01223.1_g00007.1 274 TCPYLKFAHFTANQAILEAFTNCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDPLQQVGWKLAQLADTI 359
                              ************************************************************************************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              gv+fef+ +va++l+dl+   L+++p   Ea+aVn+v++lhrll++++++e+    vL+ +k+++Pk+v++veqea+hn++ F +r
  Sme2.5_01223.1_g00007.1 360 GVEFEFRGFVANSLADLDAAILDIRPseTEAVAVNSVFELHRLLSRPGAIEK----VLNSIKQMNPKIVTLVEQEANHNAGVFIDR 441
                              *************************9999***************99999999....****************************** PP

                     GRAS 257 flealeyysalfdsleaklpres........eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                              f eal+yys++fdsle++ +++s        +++ ++++++lgr+i+nvvaceg++r+erhetl++Wr r++++GF pv+l+++a 
  Sme2.5_01223.1_g00007.1 442 FNEALHYYSTMFDSLESSSSPTSglaqtpvnNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMSSSGFDPVHLGSNAF 527
                              ***************999555555555557799***************************************************** PP

                     GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Sme2.5_01223.1_g00007.1 528 KQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 568
                              ****************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120416.2E-3642108IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.3E-3542115No hitNo description
PROSITE profilePS5098567.848172547IPR005202Transcription factor GRAS
PfamPF035149.4E-137198568IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MKRDRDRERE KTTFHGVSHG GSSGKAKIWE EDEEEQPDAG VDELLAVLGY KVKSSDMAEV  60
AQKLEQLEMA MGTSMEDGIT HLSTDTVHKN PSDLCGWVQS MLSELNPTSI DMANGRENND  120
LVVSGSGSSS TIIDFSQNRT TTISDDDLRA IPGGAVFRDS SDSSNKRQRS SLNTNLLTDS  180
SASRPVVLVD SQETGVRLVH TLMACAEAVQ QENFNLADAL VRHIGILAVS QSGAMRKVAT  240
YFAEALARRI YKIYPQDSIE SSYTDVLQMH FYETCPYLKF AHFTANQAIL EAFTNCNKVH  300
VIDFSLKQGM QWPALMQALA LRPGGPPAFR LTGIGPPQPD NTDPLQQVGW KLAQLADTIG  360
VEFEFRGFVA NSLADLDAAI LDIRPSETEA VAVNSVFELH RLLSRPGAIE KVLNSIKQMN  420
PKIVTLVEQE ANHNAGVFID RFNEALHYYS TMFDSLESSS SPTSGLAQTP VNNQDLVMSE  480
VYLGRQICNV VACEGSDRVE RHETLNQWRV RMSSSGFDPV HLGSNAFKQA SMLLALFAGG  540
DGYRVEENDG CLMLGWHTRP LIATSAWQLT ADSGAVEVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6719356714378Protein SCARECROW
5b3h_A1e-6719356713377Protein SCARECROW
5b3h_D1e-6719356713377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305514.10.0DELLA protein GAI
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLM1BA420.0M1BA42_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000405890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]