PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01200.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 247aa    MW: 27599.2 Da    PI: 4.037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01200.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-191667156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             s y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aaka +aa  +l+ge
  Sme2.5_01200.1_g00005.1 16 SIYRGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAAKAFDAALFCLRGE 67
                             57*****999.**********933...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-121667IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-291775IPR001471AP2/ERF domain
CDDcd000183.02E-291776No hitNo description
PROSITE profilePS5103221.8781774IPR001471AP2/ERF domain
SMARTSM003803.3E-331780IPR001471AP2/ERF domain
PRINTSPR003678.7E-101829IPR001471AP2/ERF domain
PRINTSPR003678.7E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKPTSESSP SSSSSSIYRG VRKRKWGKWV SEIRLPNSRE RIWLGSYDTP EKAAKAFDAA  60
LFCLRGESAN FNFPENPPEI LNGRSMTPSE IQTAAAQYAN STDSDLNRVG PRENSDLSSS  120
SSEMFESPSV SVSVSDRVES EKTEMTLDNE FMYRGESSSV VESEKTELSL DNGFMDMFSS  180
MGTANDISNF GIFPNFDDLS DEYFVPPPSP LLSSSQMPNL ELLEEENYLN YDGFQSQGSS  240
FLWNFED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1518751573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060745.11e-126ethylene-responsive transcription factor ERF017
TrEMBLA0A3Q7J3S71e-122A0A3Q7J3S7_SOLLC; Uncharacterized protein
STRINGSolyc12g009240.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-51ERF family protein