PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01191.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 243aa MW: 25553.5 Da PI: 8.4977 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 23 | 82 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rkn k+s Sme2.5_01191.1_g00008.1 23 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKNAKRS 82 57899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.4E-33 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-26 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.106 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MPSDVSERRA AKQQQGGAPA PEPEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKACRRYW 60 THGGTLRDIP IGGGSRKNAK RSRTITTNSI NSTSCLSSTL SPREYHHAPN PSHVSPFLVP 120 LAADHGGSLP FDVKPGVNMC GSFTSLLSSA QGPAGLLALG GFGLGVGSGI EDMGFGLGRP 180 IWQFPGVSHT NADSNNNSNG AGANMLGTTW QLATGGEGGF VGAGGEIFNF PDLAISTHGN 240 GMK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338240.1 | 1e-139 | PREDICTED: dof zinc finger protein DOF3.4 | ||||
TrEMBL | M1AMQ1 | 1e-138 | M1AMQ1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026137 | 1e-138 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 7e-40 | OBF binding protein 1 |