PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01189.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24855.7 Da PI: 7.5448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 94 | 143 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Sme2.5_01189.1_g00007.1 94 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEDAARAYDRAAIEFRG 143 59*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 94 | 151 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 94 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 94 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.75 | 94 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-22 | 94 | 151 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-21 | 94 | 150 | No hit | No description |
PRINTS | PR00367 | 7.8E-12 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-12 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVAALKNVIT GATHSSATAQ ELQYDVTMSS HSTSMSHSIE PPLFNVPAEP EPCQFCKING 60 CLGCNYFGTP AATVAEDNKN KNTLKIVAKK KKKNYRGVRQ RPWGKWAAEI RDPRRAARVW 120 LGTFTTAEDA ARAYDRAAIE FRGPRAKLNF SFADYTSIQH HNASSSPPLQ PQQQQQQGII 180 NTEDEFWDEL MASDNEIQDW FRTMSFNGES SDSANGYITH SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 91 | 150 | 2 | 62 | ATERF1 |
3gcc_A | 3e-24 | 91 | 150 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 93 | AKKKKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF547978 | 1e-155 | KF547978.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 80 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762423.1 | 2e-98 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Refseq | XP_016439810.1 | 2e-98 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 7e-36 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S3XIL4 | 5e-97 | A0A1S3XIL4_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1U7V7Q0 | 5e-97 | A0A1U7V7Q0_NICSY; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009762423.1 | 9e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-34 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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