PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_01146.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 454aa MW: 51142.3 Da PI: 5.4688 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 113.7 | 2.4e-35 | 159 | 312 | 2 | 149 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfs 85 ++lL cA a++ g+++++q++L l+ela+ +gd+++Rlaa+ ++AL ++l++ s+se ++++ ++ ++ n++ ++ f+ Sme2.5_01146.1_g00010.1 159 EHLLNPCAAAITVGNMNRVQHFLYVLNELAAFAGDANHRLAAHGLRALTHHLSSpaSSSESSASVGITNFASANHKFFRDSMINFN 244 699**************************************************9655666666777888887778888788888** PP GRAS 86 evsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgs 149 ++sP++++ + +aN+ +l+ + ++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + Sme2.5_01146.1_g00010.1 245 DISPWFRIHNNIANSSVLQIIGEQdrlKNLHILDIGVSHGFQWPTLLEELTRRSgGPPPLVRLTVITP 312 **********************99555556************************55666******988 PP | |||||||
2 | GRAS | 65.4 | 1.1e-20 | 325 | 453 | 240 | 374 |
GRAS 240 vvveqeadhns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 v+ e+++ns ++F+ f++ +ey + ++ds+++ + + r + Er++++ e+ +++ + g++ +e++ekW er++++GF Sme2.5_01146.1_g00010.1 325 VIGPPECSCNScGDFAMTFSRRVEYLWGFLDSTSVAY----KGRESEERRMMEGEAAKALINMGEM----NERKEKWCERMRSVGF 402 56667889955279*******************8885....6666667777777788888888888....78888*********** PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++e++ + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+ Sme2.5_01146.1_g00010.1 403 VKEVFGEDVIDGARALLRKYDsNWEMRVEEKDGCVDLWWKGQPISFCSLWK 453 *********************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.18 | 132 | 454 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-33 | 159 | 312 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-18 | 325 | 453 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MAIDEPEPNS NSDPIAEWLA TTLSDVPSFL DGYTDDLSFY GDSWWDPDQD DQIVNHNIII 60 DNTFNISSTV NTDISNIPPE PILLDHPQPL DLPKKRKTSS SDHNPKVSRK NPNRQMNEEE 120 DARAVVDQGV QVRRSTGPRR VTTRTTGNNS NNKEGRWAEH LLNPCAAAIT VGNMNRVQHF 180 LYVLNELAAF AGDANHRLAA HGLRALTHHL SSPASSSESS ASVGITNFAS ANHKFFRDSM 240 INFNDISPWF RIHNNIANSS VLQIIGEQDR LKNLHILDIG VSHGFQWPTL LEELTRRSGG 300 PPPLVRLTVI TPTIENGEMR GTPFVIGPPE CSCNSCGDFA MTFSRRVEYL WGFLDSTSVA 360 YKGRESEERR MMEGEAAKAL INMGEMNERK EKWCERMRSV GFVKEVFGED VIDGARALLR 420 KYDSNWEMRV EEKDGCVDLW WKGQPISFCS LWKI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-15 | 155 | 311 | 84 | 237 | Protein SHORT-ROOT |
5b3h_B | 2e-15 | 155 | 311 | 30 | 183 | Protein SHORT-ROOT |
5b3h_E | 2e-15 | 155 | 311 | 30 | 183 | Protein SHORT-ROOT |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 92 | 98 | PKKRKTS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562454.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 2e-80 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1U8G393 | 0.0 | A0A1U8G393_CAPAN; nodulation-signaling pathway 1 protein-like | ||||
STRING | PGSC0003DMT400089692 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-60 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|