PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01130.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Whirly
Protein Properties Length: 281aa    MW: 31077.1 Da    PI: 9.748
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01130.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly216.91.8e-671042421139
                   Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86 
                              s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+
  Sme2.5_01130.1_g00004.1 104 SIYKGKAALTVEPRSPEFSPLDSGAFKLSRDGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 189
                              7************************************************************************************* PP

                   Whirly  87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                              eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
  Sme2.5_01130.1_g00004.1 190 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 242
                              *************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.6E-7992264IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.75E-8197281IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.2E-62105239IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNFSLSPSP TASFKLNLQN PTKTSPYHYQ PLSFSSSIST TKSFYALPHT AALPRKLSLT  60
CRHSDYFEPQ QQQQQPQAAI LGLFLNTNKS SLGASTPKVF VGYSIYKGKA ALTVEPRSPE  120
FSPLDSGAFK LSRDGMVMLQ FAPAAGVRQY DWSRKQVFSL SVTEIGSIIS LGAKDSCEFF  180
HDPNKGRSDE GRVRKVLKVE PLPDGSGHFF NLSVQNKLIN LDENIYIPVT KAEFAVLVSA  240
FNFVVPYLLG WHTAANSFKP EDASRSNNAN PRSGAELEWN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1366228012219p24: plant transcriptional regulator PBF-2
1l3a_B1e-1366228012219p24: plant transcriptional regulator PBF-2
1l3a_C1e-1366228012219p24: plant transcriptional regulator PBF-2
1l3a_D1e-1366228012219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2333420.0AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275155.11e-166single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-167WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A0V0HSY51e-163A0A0V0HSY5_SOLCH; Putative single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGPGSC0003DMT4000454391e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-111ssDNA-binding transcriptional regulator