PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01130.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 334aa    MW: 37596.8 Da    PI: 7.3343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01130.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30114173159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ +d++++++tYeg+Hnh+
  Sme2.5_01130.1_g00003.1 114 MNDGCQWRKYGQKIAKGNPCPRAYYRCTISpSCPVRKQVQRCCDDTSILITTYEGTHNHP 173
                              58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3199175IPR003657WRKY domain
SuperFamilySSF1182901.96E-27108175IPR003657WRKY domain
PROSITE profilePS5081128.644109175IPR003657WRKY domain
SMARTSM007744.1E-35114174IPR003657WRKY domain
PfamPF031061.2E-26115173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSTTAIINK DKEEEELLAS TKKEDEDQLN STKCEIFEAK EENERLKCCK FTQENSFDEE  60
AKKENIKNIE KSIFVQNYPP SKMDYYNYDK DFLEQIPQKK ARVSVRAVCG TTMMNDGCQW  120
RKYGQKIAKG NPCPRAYYRC TISPSCPVRK QVQRCCDDTS ILITTYEGTH NHPLPFSATA  180
MASTTNAAAS MLRCTSTSST SQQFLPNADQ NLHGKFNFTN NNLLLATNNN APTFSLPKTS  240
ISTSQSHPTI TLDFTTNSSI TNSNPSSFNS YTTLCNNFKS QIGASSYLGR PCFSNHFQDQ  300
SGYTTVQYSD GVRISDEWIQ KNAKVSHLGF DHVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22101175174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357268.11e-131PREDICTED: probable WRKY transcription factor 72
TrEMBLK4BWN71e-117K4BWN7_SOLLC; Uncharacterized protein
STRINGSolyc05g007110.2.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-45WRKY DNA-binding protein 9