PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_01102.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 77608.8 Da PI: 6.4188 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.2e-22 | 128 | 232 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD Sme2.5_01102.1_g00006.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDA 211 99****************************964333..4459******************************************** PP EEEEE-.SS.SEE..EEEEE- CS B3 80 vvFkld.gr.sefelvvkvfr 98 ++F ++ ++ +++el+v+v+r Sme2.5_01102.1_g00006.1 212 FIFLRQvDEgENGELRVGVRR 232 ***9665667********997 PP | |||||||
2 | Auxin_resp | 112.9 | 3e-37 | 258 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d ++ Wp+S+WrsLk Sme2.5_01102.1_g00006.1 258 ASHAISTGTLFSVFYKPRTSQSEFIVTVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNPSSGWPDSEWRSLK 340 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-41 | 117 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-38 | 125 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.20E-20 | 126 | 232 | No hit | No description |
SMART | SM01019 | 3.1E-19 | 128 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.941 | 128 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-21 | 128 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-35 | 258 | 340 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-12 | 570 | 670 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.711 | 579 | 672 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.62E-12 | 581 | 656 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 696 aa Download sequence Send to blast |
MAHVAANHFG GGAHQGASPT DALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST 60 HQGVDRHLPS FNLPAKILCK VMNVQLRAEA ETDEVYAQIT LHPEPDQGEI TSPDPPLPEP 120 QKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA SDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRQVDE GENGELRVGV RRLMRQLNNI 240 PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSQSE FIVTVNKYLE ARNHKLSVGM 300 RFKMRFEGEE VPERRFSGTI VGVGDNPSSG WPDSEWRSLK VHWDEPSSIL RPDRVSPWDM 360 EPLVTTTPTN TQPPQRNKRA RPSVLPSPVQ ELPALGLKSF SCAVSLSLLI VHTFSLNNAN 420 FVGMWKSPVD SPSSFSYYDP SRGRDLYPSP KLSSAAKGLG QAENGSMPFS TKTMYWSSQS 480 ELCTESVAPA SEKRPANGCR LFGIELHHAT IDENSLVPMP LAVMEDHMPL AVMEDQPAPS 540 LYVDSDQNSE PSYPIPSVSC EPEKSSLRST HESQSKQIRS CTKVHMQGKA VGRAVDLTRL 600 YSYEDLLKKL EEMFEIEGEL CGSTKKWQVV YTDDEDDMMM VGDDPWHEFC SMVRKIYVYT 660 AEEAKRLSPK IKLPVDEMKP GKSVSDGATV INEEKA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 363 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 363 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 363 | 3 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM061154 | 0.0 | HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234871.2 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A3Q7EPY4 | 0.0 | A0A3Q7EPY4_SOLLC; Auxin response factor | ||||
STRING | Solyc01g103050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5838 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|