PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01098.1_g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 224aa MW: 25221.3 Da PI: 5.1201 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 167.5 | 1.7e-52 | 56 | 149 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdrf+Pianv+rim+++lP +akis+d+ket+qecvsefisfvt+ea+++cq e+rkti+++d+lwa+++lGf+dy+epl++yl Sme2.5_01098.1_g00014.1 56 REQDRFMPIANVIRIMRRILPPHAKISDDSKETIQECVSEFISFVTGEANERCQCEQRKTITAEDILWAMSKLGFDDYIEPLTLYL 141 89************************************************************************************ PP NF-YB 88 kkyreleg 95 ++yre++g Sme2.5_01098.1_g00014.1 142 HRYREFDG 149 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-48 | 50 | 153 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.86E-37 | 58 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-25 | 61 | 125 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-16 | 89 | 107 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 92 | 108 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.1E-16 | 108 | 126 | No hit | No description |
PRINTS | PR00615 | 1.1E-16 | 127 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDNNSKHVYV GGSGNRGFHG YATFPTPPRP ATEMRTMGVP AHPNQQAEDS DQCTIREQDR 60 FMPIANVIRI MRRILPPHAK ISDDSKETIQ ECVSEFISFV TGEANERCQC EQRKTITAED 120 ILWAMSKLGF DDYIEPLTLY LHRYREFDGG DRGSLRGEPL MLKRPLVDPA YHMLPPNFPM 180 AHHHASYFVY PPPMGNGTYL QGDGSTSQCA VVESDDVESP AEES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-60 | 54 | 146 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236948 | 1e-112 | AC236948.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0114E01, complete sequence. | |||
GenBank | HG975523 | 1e-112 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016550304.1 | 1e-105 | PREDICTED: nuclear transcription factor Y subunit B-6 isoform X1 | ||||
Swissprot | Q84W66 | 3e-64 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1U8F2B7 | 1e-104 | A0A1U8F2B7_CAPAN; Nuclear transcription factor Y subunit B-9 | ||||
TrEMBL | A0A2G2Y492 | 1e-104 | A0A2G2Y492_CAPAN; nuclear transcription factor Y subunit B-6 isoform X1 | ||||
STRING | XP_009611476.1 | 2e-99 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 1e-66 | nuclear factor Y, subunit B6 |