PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01096.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 598aa MW: 65980.2 Da PI: 6.7816 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l Sme2.5_01096.1_g00010.1 39 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 23.8 | 1.1e-07 | 92 | 120 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g++T+eE+ +++++++++G++ W++ a++ Sme2.5_01096.1_g00010.1 92 KGAFTPEEERRIIELHAKMGNK-WARMAAE 120 799*******************.***9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.129 | 34 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-24 | 40 | 116 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 40 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.18E-11 | 41 | 86 | No hit | No description |
SMART | SM00717 | 2.5E-4 | 91 | 219 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.55 | 91 | 139 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-6 | 92 | 120 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.81E-5 | 92 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00622 | 94 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 99 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.81E-5 | 189 | 218 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 199 | 218 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MSMTSGSDDR MASQDGVDSP SVEDACGGGN TGGGLPLKKG PWTSAEDAIL VEYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE 120 SAQYAKQKRH AYTLAASLER NVPRNYLNEL KARCNIEKVK VLTVNALLLG RRDKFLHSFC 180 GFCDVPSPLF RHMVHMILLK LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DICFQTISEN 240 KQNEELGTFS STDSPFPDFL PMNNFEIPAV EFKRLEFNQQ LCPQALLDIP TGGILDIPGR 300 SLLAQGLNSA YYNRSFFSTT HPAKRIRGSE SLFSCLTGDC SPSKNDGSFP TCHQYQDGGS 360 LLAQSMGFSS SFNQNLTSDH HPSSLGVIPG SHALLNGNTS SSEPSWAKKL ELPSLQSQMA 420 SRGLPSSPLP SLESVETLIQ SPLTEHTESC HLSPRNSGLL DAVLYESQTM RGSKGILHQE 480 NSGDVVDNSC PDLHETEWEP YGDPISPLGH SAASVFSEYT PTSGSSSEEP QLVPIPACKI 540 KQEKFDFGPY DGQDDASNLI RSRPDYLLDS NCFGHMQHTD KAVDVVLVHR MPCLLSSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 34 | 118 | 1 | 85 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF175475 | 0.0 | EF175475.1 Solanum lycopersicum GAMYB-like2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361138.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_006361139.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X2 | ||||
TrEMBL | M1A5J5 | 0.0 | M1A5J5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015156 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 9e-41 | myb domain protein 101 |