PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01070.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 1298aa    MW: 148385 Da    PI: 9.6188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01070.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037175194120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  Sme2.5_01070.1_g00005.1 175 FSCPLCFKTFNRYNNMQMHM 194
                              89*****************9 PP
2zf-C2H212.20.00055259281123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C +Cgk F  + + ++H +++
  Sme2.5_01070.1_g00005.1 259 FMCRKCGKAFAVRGDWRTHEKNC 281
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66175202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-4175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576678.67E-6241279No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5255279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549259279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808259279IPR007087Zinc finger, C2H2
PfamPF037328.2E-13391467IPR005162Retrotransposon gag domain
SMARTSM003430.008580596IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.686581596IPR001878Zinc finger, CCHC-type
SuperFamilySSF566721.02E-79679919No hitNo description
Gene3DG3DSA:3.10.10.106.2E-20707782No hitNo description
CDDcd016471.44E-59735884No hitNo description
PfamPF000785.5E-11792883IPR000477Reverse transcriptase domain
Gene3DG3DSA:3.30.420.106.9E-610391103IPR012337Ribonuclease H-like domain
SuperFamilySSF530981.44E-910391103IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1298 aa     Download sequence    Send to blast
MSDPYTNYFH GWFNNFNPLY HPSSSSTAPP FSSYNNNYML PSSTNFQYSP QPPPSPPLKE  60
PLPLLSLSPI HQHQDYSSTM EVDNNYSKEN KDQEAFISNF CDEDNRDDES VSVALQLGLP  120
NPTPDVISRI TSSTNKQEEE EDEVTVANIG YSSTLHKGQY WIPTPAQILI GPTQFSCPLC  180
FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CFCCAPGCRN NIDHPRAKPL  240
KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK  300
DHIKAFGNGH EAYVTTLIFP SREKSALSLF KCMFQQPFVV PLWKKQIVLI LRGRLRRART  360
PEEQPTPPAS QAPQGGGVAQ DEFWDAITMS KRRDDDAIPW EEFKTTFLNR FFPIELREAK  420
IMKFMNLKQG SMSVREYALK FNQLSKYAPE LVAEPRSRIN KFVSGVSDLV SRECCNAMLI  480
GDMDFSRLMT YAKLLEGEKL RKRRNGESKT ACFEGRFQNS KGGRFSQAHK FQGQGSSNAP  540
NRRFANDNPR FQDGGGVVHN PMCQRCGRNH NGPCLMNSNA CYGCGEVGHK VIDCPRTQNK  600
GRDGCPQGQG RQGVDEVPDV VIGMLKVFDF DVYALIDLGA TLSFITPLVA KKASRCLYHL  660
VRVRDVKSKV LPIESVLVVN EFLDVFLDEL PNVPPEKEID FGIDLLSDTQ PISISPYRMA  720
PTELKEQLRD LLEKGFIRPS KSPWGAPVLF VKKKDGSFRM CIDYQQLNRV TMKNKYHQVK  780
VREYDIPKMT FWTRYGHFEF VVMFFGLTNA STIFMDLMNR VFKIYLDLFV VIFIDYILIY  840
SPSEEEHVDH LRVVLQILRE DRLYAKYEKY EFWLKEVAFL GHVVSGDGIK VDTRKTEVIK  900
NWPRPLTTSD IRSFLGLAGK ANVMADALSN VSMGSLAHVD DGGKEVAREV RWMSRLGVRL  960
DEVDNGSVVV VDGSKSSLIE EVKXKEAHNS SYSIHPDSTK MYRDLKEVYC WGGMKRDIAG  1020
SCPDVPIANS ESRISKARMT KSVHFLLVKT TYGAEDYAKL YIHELVRLHG MPLSIILDRG  1080
AQFTSHFWRS FQRGLGTKVK LSREMAFLGP DLVMEAMEKV RLIRERLKIA QSRQKSYFDV  1140
RRRDLEFKVG DWVYLKVSPS KGLVRFGKKG KLNPRFVGPY KDLRRVGKDC ILVGVAYRDK  1200
HGLSGLPYIH VEEVYRQVKR LRNKGVASVK VFWRNQQVES ATWEAEVDMK KRYPYLFYST  1260
QVKENGTKKT ANAMGNNANK EYGPQVPHGP LAQPVTNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A5e-3172397778354Reverse transcriptase/ribonuclease H
4ol8_B5e-3172397778354Reverse transcriptase/ribonuclease H
4ol8_E5e-3172397778354Reverse transcriptase/ribonuclease H
4ol8_F5e-3172397778354Reverse transcriptase/ribonuclease H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-153HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein