PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01060.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 402aa    MW: 45040.3 Da    PI: 9.7619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01060.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31280338259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  Sme2.5_01060.1_g00010.1 280 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDASMLIVTYEGEHNHP 338
                              69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-34268339IPR003657WRKY domain
PROSITE profilePS5081130.4274340IPR003657WRKY domain
SuperFamilySSF1182904.97E-27277339IPR003657WRKY domain
SMARTSM007743.7E-39279339IPR003657WRKY domain
PfamPF031063.2E-27281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEEIEEGNKA AVEHCHRVID LLSSRKHDQN SYTNIVRETG EAVNKFKKVV TLLNSTLGHA  60
RVRKSNEFKT PLPRDILVEN LNSKNDDQAK ALKGLLPFNS PENRVLEVGT NVKCNLSLGS  120
PSLELSSNSR NPLNLGQQTP LPSYNYLQQQ QQQRRFLPHP QQPQMKQPAE MLYRQSNSGI  180
SLNFDSSTCA PTMSSTRSFI SSLSVDGSVA NGSNFHLIGA SNSADKSLFQ NKRKCSERGD  240
EGSMKCGSSG KCHCSKKRKH KVKRSIKIPA ISNKLADIPS DEYSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERC LEDASMLIVT YEGEHNHPRV PSQLDKTSIL GDEELCHRIR  360
DFPDCCRFRF VTMLRKFIFL SSCPPSLLLG GMGLNPIPYS TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21267341275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315198.10.0WRKY transcription factor 21
SwissprotO043361e-109WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A0V0IKS30.0A0A0V0IKS3_SOLCH; Putative WRKY transcription factor 21-like
TrEMBLA0A3Q7GRN20.0A0A3Q7GRN2_SOLLC; Uncharacterized protein
STRINGSolyc06g008610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-71WRKY DNA-binding protein 21