PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01056.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 280aa    MW: 31941.9 Da    PI: 5.3367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01056.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.49.1e-29958150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  Sme2.5_01056.1_g00004.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
                             68***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30279IPR002100Transcription factor, MADS-box
CDDcd002652.04E-39275No hitNo description
PRINTSPR004048.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN  60
KSIEDIMARY VNLPEHDRGR MYEGDFCEIT TVCEAQYREE ILHETLKQVQ ARKQVLEENY  120
NSPQAQTTTQ PQMDFAGQNV NIVNHVATSD SIANSTFMDW VPHSQRDPHV QILNFLDSNG  180
LLPFRDEADQ RMDNMLQPSL NQLHTTNVPV VTDHLSPNSR FDQNDPPRPT SFDGIIDVNN  240
APWPPLYPTG DDPFPVSQPR ERALLELFLS QLTPVHQDHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-17175174MEF2 CHIMERA
6byy_B4e-17175174MEF2 CHIMERA
6byy_C4e-17175174MEF2 CHIMERA
6byy_D4e-17175174MEF2 CHIMERA
6bz1_A4e-17175174MEF2 CHIMERA
6bz1_B4e-17175174MEF2 CHIMERA
6bz1_C4e-17175174MEF2 CHIMERA
6bz1_D4e-17175174MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755165e-91HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073130.11e-175agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A1U8GBX31e-169A0A1U8GBX3_CAPAN; agamous-like MADS-box protein AGL104 isoform X2
STRINGSolyc04g078300.2.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-38AGAMOUS-like 104