PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01030.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 486aa    MW: 54384 Da    PI: 6.9706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01030.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32153209259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+WrKYGqK+vkgsefprsYY+Ct+++C vkkkvers  d++++ei+Y+geHnh+
  Sme2.5_01030.1_g00008.1 153 DDGYTWRKYGQKTVKGSEFPRSYYKCTHQNCLVKKKVERSL-DGHITEIIYKGEHNHH 209
                              8****************************************.***************8 PP
2WRKY101.55e-32324382159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +dDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ ++ k v +tYeg+Hnh+
  Sme2.5_01030.1_g00008.1 324 VDDGYRWRKYGQKVVKGNPNPRSYYKCTCAGCPVRKHVERAPDNLKSVMTTYEGKHNHQ 382
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.124147211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-28149210IPR003657WRKY domain
SuperFamilySSF1182902.22E-25151210IPR003657WRKY domain
SMARTSM007746.5E-37152210IPR003657WRKY domain
PfamPF031063.4E-25153209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-35309384IPR003657WRKY domain
SuperFamilySSF1182904.45E-28317384IPR003657WRKY domain
PROSITE profilePS5081135.978319384IPR003657WRKY domain
SMARTSM007741.5E-35324383IPR003657WRKY domain
PfamPF031068.7E-25325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEGNGYPIDE WNCQLGENFS NNNKRSIAQR CGFNASSIST PATLPPPERE TFLTIPPGLT  60
PAALLDSPVM LPISQAPQSP TTGSFQPFSI MINQEQYSLP SSANTQPQSR YNFEFPTASP  120
VDSDTPNSQQ NMSGMKLVNC CLNPNINSSN GSDDGYTWRK YGQKTVKGSE FPRSYYKCTH  180
QNCLVKKKVE RSLDGHITEI IYKGEHNHHK SRATMSSNSY HLENTNSSTQ FEGNKDVRLV  240
SNEVSNSLMS NHQTANTNVL VSAETTPEPS STLASCDDED EDRSTSFGDD NDNEFDHKRR  300
RSLSSRTTRE PRVVVQIESE IDIVDDGYRW RKYGQKVVKG NPNPRSYYKC TCAGCPVRKH  360
VERAPDNLKS VMTTYEGKHN HQVPSANKKN ASHLGTQVEE FEPSFLENDL GYLRFPPNPL  420
FVSPTQISTS YPFTLHKPHF SLPLNFPLGG FHCNHLLLTP NSVSSQSSLA IRDQNHIYNN  480
NTNTNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32153385878Probable WRKY transcription factor 4
2lex_A2e-32153385878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598832.11e-178PREDICTED: probable WRKY transcription factor 33 isoform X1
TrEMBLA0A0V0ITX21e-177A0A0V0ITX2_SOLCH; Putative WRKY transcription factor 2-like
STRINGXP_009598832.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-81WRKY DNA-binding protein 4