PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01023.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 742aa    MW: 81470 Da    PI: 6.9322
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01023.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.15.2e-25263318155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ..kYRl 55 
                              k+r++W+ eLH++Fv av qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQ  kYRl
  Sme2.5_01023.1_g00008.1 263 KARVVWSLELHRKFVAAVGQL-GIEKAVPKRILDLMNVNGLTRENVASHLQalKYRL 318
                              68*******************.*****************************888997 PP
2Response_reg61.54.3e-2110418925109
                              EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
             Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                              ev+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++++ +++l+ ++ Ga d+l+Kp+ +eel+
  Sme2.5_01023.1_g00008.1 104 EVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNSDTKLVLKGISHGACDYLVKPVRIEELR 188
                              799************999889*******************87754.558************************************9 PP

                              H CS
             Response_reg 109 k 109
                              +
  Sme2.5_01023.1_g00008.1 189 N 189
                              7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-362550No hitNo description
PROSITE profilePS5011030.46977195IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.1E-1488191IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.97E-26104201IPR011006CheY-like superfamily
PfamPF000722.0E-17104190IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.09E-23104195No hitNo description
Gene3DG3DSA:3.40.50.23003.0E-36104202No hitNo description
PROSITE profilePS5129411.284260319IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-26260323IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15260322IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-21263317IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MTVEEIRGNM GGGERGNNYD NFPIGLRVLA VDDDPICLKL LDGLLRKCQY QEKKNKESLF  60
LVLLLLFLVF NTQQEHFGLL CSRKRNNNNN IPSGIPQVGV GSGEVTTTSQ ARMALKMLRE  120
NRDRFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSGN SDTKLVLKGI SHGACDYLVK  180
PVRIEELRNI WQHVIRRKKV EPMSQDKSKD QDKSYQGSGE SGRGQSPTSN ADQNGKCNKK  240
RKDEEDENDE NGNDNEDPTT QKKARVVWSL ELHRKFVAAV GQLGIEKAVP KRILDLMNVN  300
GLTRENVASH LQALKYRLYL KRVNVQNQQA NMVAALGGRD YVRMGSLDGL GDFRTLGGSG  360
RYTHAALSSY SSGGMLGRLN SAAGQSVRNL AGSQLLQPSH GQNLSNPVDV FAKLNPNIPP  420
ASQNTGLFQG IPASLELDQL QLSKPSVHIS LDESRLLTAD VLGCSSNSLS HVPNNLMLLQ  480
GNSQQPLTGG GFGNQHSPNM TLFSSDSFNT SVDGSSNFME HGKCNGNWQN TVQLSKFQSS  540
SFPLTGSFIN SHLPQNSTGE TATHLPNSPL DFTSTTSVSP PFGDSRGEIQ YRQSMTGAVQ  600
RMNQTSSQVW ADNKQHYSHN SNNTFASNLS SQVPNDGSMA SLSHSMNQSN ENFGRRMDMS  660
LIGRSSGGSS TLMPHTEHEK LTLDSSTRTN EDFLLDPTKQ QVGFSPRGYD SLDDLVTAMK  720
REQDGGMLDE GRYGFDNSPF GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22259324164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343681.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLM0ZUD30.0M0ZUD3_SOLTU; Two-component response regulator
STRINGSolyc07g005140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-104response regulator 12