PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01020.1_g00017.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 399aa    MW: 45286 Da    PI: 5.6769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01020.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.7e-161050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +ien+  r v++ kR +g+l KA+EL vLCd+e+a iifs+
  Sme2.5_01020.1_g00017.1 10 FIENDHDRRVSYRKREKGLLTKAQELKVLCDVEIAAIIFSP 50
                             8***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.413149IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-18160IPR002100Transcription factor, MADS-box
CDDcd002661.62E-24384No hitNo description
PRINTSPR004044.0E-11323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23395IPR002100Transcription factor, MADS-box
PfamPF003194.6E-161055IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPRKKVEFSF IENDHDRRVS YRKREKGLLT KAQELKVLCD VEIAAIIFSP YKNEPTVFPD  60
HDSAINILTK FRELPPTDRS KKMMTRNQFI MKRIAKLNEK LIKLRKKNRV KEFTNEMSEV  120
LKGKEIPIDM QAYNVNDLSY IIKRNLKEVR EAIKEKIGEE ESTSNIPRSI IEPMIPSWTN  180
IEGPHNHLLS HTGLQVSMVP SMSPSAFSSQ TNYEWNENSL FVPNLATTSV ALPTVSLSTS  240
HEFPDQMFHQ ADPLRAPLQL IPLMDPPHVL QSPLSFSEML SPMFPQLDSL IPQNMAIRTS  300
DNPTSSITIA SPMPLPLLAP QLSALMCSPM TSQTDPLIEI PPTDAPMPMD NYQNNFLDTP  360
QSLPLSEIFN WNNDDAVALL EDLSLNNINA QDPKNNNNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341870.11e-133PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1CY431e-132M1CY43_SOLTU; Uncharacterized protein
TrEMBLM1D9361e-132M1D936_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000772581e-132(Solanum tuberosum)
STRINGPGSC0003DMT4000852561e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.19e-29AGAMOUS-like 38