PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01013.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | BES1 | ||||||||
Protein Properties | Length: 322aa MW: 34640.7 Da PI: 8.3625 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 208 | 2.6e-64 | 2 | 145 | 1 | 148 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGtty+kg+kpl + +++g sa Sme2.5_01013.1_g00006.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYKKGCKPLGHVDIIGYSA 87 5899********************************************************************************** PP DUF822 87 saspesslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvss 148 s+sp+ss++ +sp +sy++sp+sssfpsp+s++ + +a++ ++l+p+l++ls+ ss Sme2.5_01013.1_g00006.1 88 SVSPCSSYK--------PSPGASYNPSPASSSFPSPVSSNYVANAQNnhdpNTLIPWLKNLSSGSS 145 *******99........9********************9999887777899*********998443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-65 | 3 | 141 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG 60 WIVEEDGTTY KKGCKPLGHV DIIGYSASVS PCSSYKPSPG ASYNPSPASS SFPSPVSSNY 120 VANAQNNHDP NTLIPWLKNL SSGSSPSSSR FPHHLYIPGS SISAPVTPPL SSPTARTPRM 180 SDDPMATTWA QQHYAFLPSS TPASPGRQTP PDSGWLSGVQ TPQDGPSSPT FSLVSPNPFG 240 FKEPISNGGS RMWTPGQSGA CSPAIASGID QTADVPMSDA ISAEFAFGSH MMGLVKPWEG 300 ERIHEECATD ELELTLGNSS TR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-24 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234074.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X1 | ||||
Refseq | XP_004234075.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X2 | ||||
Refseq | XP_006356092.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1 | ||||
Refseq | XP_006356093.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2 | ||||
Swissprot | Q9ZV88 | 1e-129 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A3Q7FF78 | 0.0 | A0A3Q7FF78_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1CNX3 | 0.0 | M1CNX3_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g005990.2.1 | 0.0 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400071511 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1984 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-115 | BES1/BZR1 homolog 4 |