PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00994.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 262aa    MW: 30102.9 Da    PI: 6.7218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00994.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed +l+ +++  G  +W++ ++  g+ R++k+c++rw +yl
  Sme2.5_00994.1_g00003.1 14 KGPWTPQEDNILISYIQNNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 61
                             79******************************99************97 PP

2Myb_DNA-binding53.17.2e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w++ 
  Sme2.5_00994.1_g00003.1  67 RGNFTKEEEETIIHLHEKLGNR-WSAIAAKLP-GRTDNEIKNIWHTN 111
                              89********************.*********.*********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.625961IPR017930Myb domain
SuperFamilySSF466891.25E-2910108IPR009057Homeodomain-like
SMARTSM007178.1E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231568IPR009057Homeodomain-like
CDDcd001672.82E-81661No hitNo description
PROSITE profilePS5129426.14262116IPR017930Myb domain
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002492.0E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2669117IPR009057Homeodomain-like
CDDcd001675.91E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPQ EDNILISYIQ NNGHSNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TKEEEETIIH LHEKLGNRWS AIAAKLPGRT DNEIKNIWHT NLKKKLKNYE  120
SPQNSKRRSK INHDSNKGPT TSESSNNSDL STSISTSIKQ HIKIAPSSPQ LSSSEMSSVT  180
LVMDDHKMVM VKEEKIESES EYFPKIDESV WTEENNEYVM AAGHGQEENA DVLTTSTKME  240
EDMDFWYNVF IKTEDLPELP EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX983080.0X98308.1 L.esculentum mRNA for myb-related protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077924.11e-152transcription factor MYB4-like
SwissprotQ9LTC42e-81MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A0V0HMD91e-151A0A0V0HMD9_SOLCH; Putative myb-related protein Myb4-like
STRINGPGSC0003DMT4000420071e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-75myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]