PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00970.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 552aa    MW: 61689.5 Da    PI: 8.344
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00970.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-093513832254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              ++yp+ +++  LAk++gL+ +qV++WF N R +
  Sme2.5_00970.1_g00001.1 351 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 383
                              89*****************************88 PP
2BELL92.73.5e-30205273371
                     BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                               e+++ k kL+++l+eV++rYkqy++q+q v++sFe v glg+a+p+++l lka+S+hFrcLk+ i++q
  Sme2.5_00970.1_g00001.1 205 SEHRRNKYKLITMLHEVCRRYKQYYQQVQGVVASFESVSGLGNAAPFANLSLKALSKHFRCLKNTISHQ 273
                              689999*************************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.1E-39150272IPR006563POX domain
PfamPF075261.4E-31155271IPR006563POX domain
SMARTSM003898.7E-10327391IPR001356Homeobox domain
CDDcd000861.82E-11327388No hitNo description
SuperFamilySSF466895.99E-17330394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-27330391IPR009057Homeodomain-like
PfamPF059201.3E-18344383IPR008422Homeobox KN domain
PROSITE profilePS5007111.807346387IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAAEGYEAYH VPQQTRRDKL RGIHTNFVPN FYNNNPSFLP NPSDLLTIHD YKDKSMDPQI  60
SPSFHEINNH TFLYNINQNH QSSNFHHDVT HNPNNNNYVS TGQGLSLSLS SRDNTAAPEL  120
NSSLFTTAAA VAAAYCCNNE LLCKSSGPFT GYASILKGSR FLKPAQLLME EICGINYAEK  180
LLEPDEDSVG VMDPSIDGPD DNNGSEHRRN KYKLITMLHE VCRRYKQYYQ QVQGVVASFE  240
SVSGLGNAAP FANLSLKALS KHFRCLKNTI SHQMNYTIKT HSHSSQINCD DSTSTRSVGK  300
GNFNHNNFQR VALHNAGYVE HHHQPVWRPQ RGLPGRAVTV LRAWLFDHFL HPYPTDSDKV  360
MLAKQTGLSR NQVSNWFINA RVRLWKPMVE EIHMLESRQA NKSASQRMQG QTNNSIKHTA  420
TNNYNNSLPP DQNPSTSSVQ QFQQVPSKRT RNNDPHDQIM NCLPRSCVGI DHVSASTGGN  480
GGVSLTLGLQ HQNHNGIGNG GLSLEPFPRN AARRFGIEAN NEGFMFGTGG FEEQNRHNSN  540
INGGQLLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15333391563Homeobox protein Meis2
3k2a_B4e-15333391563Homeobox protein Meis2
4xrs_A4e-15333390158Homeobox protein Meis1
4xrs_B4e-15333390158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755225e-40HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349489.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM87e-96BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLM1BNG60.0M1BNG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000492350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-83TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]