PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00924.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 576aa    MW: 62582.4 Da    PI: 8.1737
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00924.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-24184228145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Sme2.5_00924.1_g00005.1 184 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 228
                              79****************************************985 PP
2QLQ61.81.8e-21116152137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k
  Sme2.5_00924.1_g00005.1 116 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 152
                              59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-12116152IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.516117152IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.8E-16117151IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663184228IPR014977WRC domain
PfamPF088796.8E-21185227IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MFVASAETKQ KWYGSGGFNK HERPSVNEDE WDKDKKLPKT TDDFSSSKPT MLFQQLPISH  60
ETQQMLSFST PNSQNHVTMA YYNQHPSSAF ARNSSGYGSG ALNTGNMHGL IAGVKGPFTP  120
SQWMELEHQA LIYKYITANV PIPPYLLNPI RKALESAGFS TFPGLRSNVL GWGAFHLGFS  180
NSNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQT PNSASGNNTG  240
AATTSAKLTN MSSAASTALV SGGGVAASNS LNLSHHNQLC NLQPAVTNLS TTSPYLERSY  300
AAKENFGERH SDTKGPSNVS PSVKEGQYSM QKEQTLYGLT SRAEFGLVCA DSLINPLNKN  360
SSLVNCRSYG NSDDISDQES KSQHHPLRQF MDDWPKNQSG QPNVSWTDID LQSDPTQLSI  420
SIPLVTSDFM SSTSSPANDK LTASPHRSRE HEATQMGLGI GTIISEHNQR QGSWIPISWE  480
SSLGGPLGEV LHSTNSSLGD CKNKSALNLM TEGWDRSPCM VSSPTGVLQK SSFGSLSNSS  540
AGSSPRAENS KMTNEGSSLC NGLLVTTLMN PTLPAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9978520.0FJ997852.1 Capsicum annuum UPA17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238069.10.0growth-regulating factor 1-like isoform X2
TrEMBLA0A3Q7G8H80.0A0A3Q7G8H8_SOLLC; Uncharacterized protein
STRINGSolyc04g077510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-91growth-regulating factor 1