PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00918.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 306aa    MW: 33941.5 Da    PI: 5.9894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00918.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-083162132
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                             +g W++eEde+l ++    G g+W+ Iar  g
  Sme2.5_00918.1_g00007.1 31 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAG 62
                             678**************************998 PP
2Myb_DNA-binding24.94.8e-0865872346
                             -HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                             +W+ Ia++++ gRt++++k++w++
  Sme2.5_00918.1_g00007.1 65 RWSQIAARLP-GRTDNEIKNFWNS 87
                             6*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0692693IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-102863IPR009057Homeodomain-like
SMARTSM007171.6E-103091IPR001005SANT/Myb domain
PfamPF002493.1E-123187IPR001005SANT/Myb domain
SuperFamilySSF466896.17E-123190IPR009057Homeodomain-like
CDDcd001672.01E-93486No hitNo description
Gene3DG3DSA:1.10.10.601.0E-116494IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRKPEHNNHN ASTMMKEKEK EKGNKLGKLR KGLWSPEEDE KLMNYMLTNG QGCWSDIARN  60
AGLQRWSQIA ARLPGRTDNE IKNFWNSTIK KRLKNNNNST PSPNTSDSSS EPRANIFPMQ  120
GHDVNVMAAL CMDNSSSTTS GSSMQAMVAS NHFNPFPQLD DTRYDISGLV GPGQFGCSGG  180
DGGFLNYGVV ETYSMMGLGS DEFSVPTLEG VHKNNNVDFS SNNIVSGAND YNNSMIEKKP  240
TNGNNNQQHL MNMSGSSDQS LKVEDYMVGF GNHHHWHGES LRIGEFDWEG LLANVSSLPY  300
LDFQVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-109HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345502.21e-158PREDICTED: transcription factor MYB46
TrEMBLM1A9C01e-157M1A9C0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000177091e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-31myb domain protein 83