PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00912.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34269.1 Da PI: 6.7689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv v+++G+g+W+t++ + g++R+ k+c++rw +yl Sme2.5_00912.1_g00004.1 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sme2.5_00912.1_g00004.1 67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.975 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.88E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.289 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE 120 ASDLYSNDGH CLSTYNSPSR GQWERTLQAD INRAKQALQN ALSLDKSSPI HDYTITDVKP 180 TNAGCYPYIK QEGEMSSTTY ASSAENIAKL LKQWTRSDST NNSEQSKASS STQFSCTTTT 240 NNNAMTEYSS SFEQSNSDQF SQAATPEAAG KFHGECKREM DDEIPFSVML ESWLFDENDD 300 LLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-27 | 14 | 116 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232220.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-103 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A3Q7FWM2 | 0.0 | A0A3Q7FWM2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g087960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-101 | myb domain protein 94 |
Publications ? help Back to Top | |||
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