PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00867.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 28604.8 Da PI: 4.4534 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H Sme2.5_00867.1_g00002.1 24 YRCSFCKRGFSNAQALGGHMNIH 46 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.55E-6 | 22 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 22 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.468 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0053 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051973 | Biological Process | positive regulation of telomerase activity | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEKSDQIVTW SSEELLGLGQ VKFYRCSFCK RGFSNAQALG GHMNIHRRDR ARLREFSSDQ 60 NLLSLDINNS IYPPPSPPLS PPPPTDDERE ESLYDDSITC SSLKRPCVTY HEENDHPTSK 120 VNDDHNPPPC PPADDDLFQR EVSSYDETIF SSSLKRPCVT YHEENDNLIT SKVDYYDHNH 180 EVMIIGDPLQ LPLFKETPLT KEASNCMEGQ VENKGMQLNP VSELDLELRL GMEPPESSTE 240 MDLRFELHKF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 3e-76 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 3e-76 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055467.1 | 1e-100 | uncharacterized protein LOC107002056 | ||||
TrEMBL | A0A3Q7IMX0 | 2e-98 | A0A3Q7IMX0_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400028783 | 6e-80 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7463 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 8e-15 | C2H2 family protein |