PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00860.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21604.4 Da PI: 7.4193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Sme2.5_00860.1_g00007.1 17 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 67 579****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-11 | 17 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-33 | 18 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-31 | 18 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.537 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 18 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-9 | 19 | 30 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.02E-30 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 3.6E-9 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MISNKSIKRN RDSSKHPVFR GVRMRNWGKW VSEIREPRKK SRIWLGTFPN PEMAARAHDV 60 AALSIKGNSA ILNFPELAGL LPRPVTLSPR DIQAAAAKAA AMDKFDNNNN NNNITSPTTS 120 PNSSSLSSLV SAIDLATSEE LTQIIELPRL GTSFFGDELS NDFVFADCSA VETAWLYPED 180 GGMISSCFDP SLLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 13 | 76 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF547975 | 0.0 | KF547975.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 20 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359762.1 | 1e-106 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-64 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0C4LFE5 | 1e-112 | A0A0C4LFE5_SOLME; Solanum melongena cultivar Pusa Uttam ethylene responsive factor 20 mRNA (Fragment) | ||||
STRING | PGSC0003DMT400005709 | 1e-105 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-60 | ERF family protein |
Publications ? help Back to Top | |||
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