PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00817.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 327aa    MW: 36372.5 Da    PI: 4.5462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00817.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1893142154
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                              s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++e
  Sme2.5_00817.1_g00006.1  93 SKYRGVRQRK-WGKWAAEIRDpF-----KaRRVWLGTYSTAEEASHAYEMKRLEFE 142
                              89*******9.**********66.....56**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1693141IPR016177DNA-binding domain
CDDcd000183.68E-2393134No hitNo description
PfamPF008473.8E-1293143IPR001471AP2/ERF domain
SMARTSM003802.8E-2094158IPR001471AP2/ERF domain
PROSITE profilePS5103220.11294152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2294141IPR001471AP2/ERF domain
PRINTSPR003675.8E-1095106IPR001471AP2/ERF domain
PRINTSPR003675.8E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSKSKNREES AIPMRKIRIV CDDPDATDSS DDERVDVSKP KRFVREILLP IVSCSKKVAE  60
TESSCQDSNN GDKNIKNRRV LAKTPKTPRA SSSKYRGVRQ RKWGKWAAEI RDPFKARRVW  120
LGTYSTAEEA SHAYEMKRLE FEAMAKGNCN TDVSEKSSKS SNNDKNRRKV NVGCVSEEDD  180
SAESLVSHTS HTSPASVFEM ESLTSGSAVV SEGKNNEKLV EQRVDVYKLD NLPLAEIGAG  240
MDFDMEMDMF FAGSDDFGQN LDDFGVNDFE DLPICGLDEQ LPTGLPDFDF DFDFDGYNES  300
CAWMDDAAAA PLMNATPPPP LNIALCP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076866.11e-179ethylene-responsive transcription factor ERF118
RefseqXP_015076867.11e-179ethylene-responsive transcription factor ERF118
TrEMBLA0A0V0IIE01e-168A0A0V0IIE0_SOLCH; Putative ethylene-responsive transcription factor-like
STRINGSolyc05g009450.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-29ERF family protein