PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00797.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 910aa MW: 102269 Da PI: 5.8398

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00797.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.3	8.2e-30	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Sme2.5_00797.1_g00008.1 589 AEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 640 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	592	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.45E-23	801	894	No hit	No description
SMART	SM00666	2.2E-24	809	892	IPR000270	PB1 domain
PROSITE profile	PS51745	26.293	809	893	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-21	810	888	No hit	No description
CDD	cd06407	8.34E-39	811	892	No hit	No description
Pfam	PF00564	2.7E-19	811	891	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MDERVIPSNP MLTTPSDYLM DLDYMDGLFL EGCWLETTDA NEFLQHNPAI FNAPFDSSFM 60 WPTSVDANNV EFNGIPSKDA QQEKQRPSLT ENLSTNHCQE LTYAKLQPFG ENMNNAMFTS 120 GLSENHLVEA PELNKRWWIG PKASSPVMDR LIWALEYIRD RSRDKDILLQ LWVPINRDGK 180 RVLSTTGQPF LLDLNYPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR 240 FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYL PELESVCEAL 300 EAVDLSTSEV STTKDAKVCD LSYRAALPEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC 360 RHSEENLIHC VSTEDSACYV ADPRVQGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT 420 SYSKLEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSNCRNPE EHRKMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETISMGEVAN HTGEQHKEHT ETSQEQRTSW TSCDAEFHEC 540 SVISVLQDEK PDGMLRKDSV EFRHRKNSAY EEGVSRNLGR TGDRRRAKAE KTITLQVLQQ 600 YFAGSLKDAA KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKIQRV IDSVQGASGT 660 LQIESFYSNF PELASPNASR MSPFADSKSN EHPTALNKQE EGCIRSPIAD ASKSPSSSCS 720 RSSSSSQCCS SGTKPHSHPL NIVGDEDPVV QEESVDNAVK RVKSEPELHL SSEALKTIPR 780 SQSHASVAEN PKSESLLVKR SPSTSQEEAP RVKVTHGEEK IRFRMQSNWR YSDLLREITR 840 RFGIDDPSGL QLKYLDDDSE WVLLTCDADL EECIDVCMSS QIQMIKLILV QDSQHHFGSS 900 FGSNSPIVVQ

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MDERVIPSNP MLTTPSDYLM DLDYMDGLFL EGCWLETTDA NEFLQHNPAI FNAPFDSSFM  60
WPTSVDANNV EFNGIPSKDA QQEKQRPSLT ENLSTNHCQE LTYAKLQPFG ENMNNAMFTS  120
GLSENHLVEA PELNKRWWIG PKASSPVMDR LIWALEYIRD RSRDKDILLQ LWVPINRDGK  180
RVLSTTGQPF LLDLNYPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR  240
FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYL PELESVCEAL  300
EAVDLSTSEV STTKDAKVCD LSYRAALPEI LEVLKSACET HGLPLAQTWV PCVQQGKGGC  360
RHSEENLIHC VSTEDSACYV ADPRVQGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT  420
SYSKLEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSNCRNPE EHRKMLTSLS  480
IIIQNVCRTL RVVTDKELQE ETISMGEVAN HTGEQHKEHT ETSQEQRTSW TSCDAEFHEC  540
SVISVLQDEK PDGMLRKDSV EFRHRKNSAY EEGVSRNLGR TGDRRRAKAE KTITLQVLQQ  600
YFAGSLKDAA KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKIQRV IDSVQGASGT  660
LQIESFYSNF PELASPNASR MSPFADSKSN EHPTALNKQE EGCIRSPIAD ASKSPSSSCS  720
RSSSSSQCCS SGTKPHSHPL NIVGDEDPVV QEESVDNAVK RVKSEPELHL SSEALKTIPR  780
SQSHASVAEN PKSESLLVKR SPSTSQEEAP RVKVTHGEEK IRFRMQSNWR YSDLLREITR  840
RFGIDDPSGL QLKYLDDDSE WVLLTCDADL EECIDVCMSS QIQMIKLILV QDSQHHFGSS  900
FGSNSPIVVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006342136.1	0.0	PREDICTED: protein NLP4
Refseq	XP_006342137.1	0.0	PREDICTED: protein NLP4
Refseq	XP_006342138.1	0.0	PREDICTED: protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	M1ALT3	0.0	M1ALT3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400025657	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein