PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00789.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 383aa    MW: 41511.8 Da    PI: 4.1563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00789.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-1395139347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+ E++l++++ + +G+g+W++I+r+  + Rt  q+ s+ qk+
  Sme2.5_00789.1_g00006.1  95 PWTEHEHKLFLRGLEVYGKGDWRSISRHSVQSRTSTQVASHAQKF 139
                              7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.03859IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-61063IPR009057Homeodomain-like
PROSITE profilePS500904.241257IPR017877Myb-like domain
CDDcd001670.001241257No hitNo description
PROSITE profilePS5129412.57687144IPR017930Myb domain
SuperFamilySSF466899.72E-1591143IPR009057Homeodomain-like
SMARTSM007175.7E-1092142IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-1393142IPR006447Myb domain, plants
CDDcd001678.56E-1095140No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1095137IPR009057Homeodomain-like
PfamPF002492.9E-995138IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSTNVTCNSS FWSKEEDIIL ENALAMHFDD KDLLKKMEEA LPEKSVDEIL HHYNELVEDI  60
NAIELGSVQL RRYPEMQGNA NQNLKADVKW QRGIPWTEHE HKLFLRGLEV YGKGDWRSIS  120
RHSVQSRTST QVASHAQKFF KRHNAPPKRK RRASILDIVS VDAEAAGTFQ VPNTEEMVGP  180
ACGGGSQVVT NTGTETNDMI GSACGGLQAV TNTKNDAENM TGPASGGLQA VTNSRNEAED  240
MTGPASGDTS NGSMLPEEST NAEQQMIAVA GGIDDPMMEQ QGANGAAYLV DTAEIGSDGI  300
DDPKMEQEGA NGTAFLVDTA EIGSDLEALL ADPIEEDISS IFAPSSSYEA AEPPPFFVFP  360
RLPSSNTPPD EEALRYVDDL FVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361808.11e-116PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015170955.11e-116PREDICTED: transcription factor DIVARICATA-like
TrEMBLM0ZND21e-115M0ZND2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000043921e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-41MYB family protein