PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00787.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 21988 Da PI: 6.9217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 8.1e-09 | 34 | 62 | 2 | 34 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslg 34 +y+GVr+++ +gr++AeIrdp++ + r++lg Sme2.5_00787.1_g00017.1 34 HYRGVRRRP-WGRYAAEIRDPVK---KCRVWLG 62 6********.**********654...5999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.48E-14 | 34 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-12 | 34 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-4 | 34 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-8 | 34 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-9 | 34 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.853 | 34 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPKGKCTTA ETAAAAVEGR VNGVTNGAVV KEVHYRGVRR RPWGRYAAEI RDPVKKCRVW 60 LGARAKTNFP IVLQPEEVNR SLSLSQNSSV ESSPAAPTAV EAAAAVTVAV AAPMVESLPL 120 DLSLGSSSSV GKFLFQKPQF HVAQIDGGVT GGITPLRYCM DAERGAGVIH HGGGDGGDAG 180 SVMKCESASS SVIDFMGLDL DLNLPPSPED M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618542.1 | 2e-43 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_016448710.1 | 2e-43 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | E7FKW3 | 5e-42 | E7FKW3_TOBAC; Ethylene response factor 6b | ||||
STRING | XP_009618542.1 | 9e-43 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 2e-16 | ethylene response factor 7 |