PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00779.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52495.2 Da PI: 6.5093 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 466.9 | 1.1e-142 | 47 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLl+cA++v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++rs+++lykal++++ s +see+ ++k+f+e Sme2.5_00779.1_g00015.1 47 LIHLLLACANHVASGSLENANIALDHISQLASPSGDTMQRIASYFNEALADRILRSWPGLYKALRSTKLS--VVSEEILVRKMFFE 130 689*************************************************************999998..6************* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 ++P+lk+++++ NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L + Ae+l Sme2.5_00779.1_g00015.1 131 IFPFLKVAFVVSNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLIQEAEKL 212 ***************************************************************....9****************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................ 214 ++pf+fn v+++le+l++e+Lrvk+gEala+++v+qlh+ll Sme2.5_00779.1_g00015.1 213 DIPFQFNQ-VVSKLENLDVERLRVKTGEALAISSVMQLHTLLahenekksslpfkhsngvglhralvnqktlgefpekdianccst 297 ********.799************************************************************************** PP GRAS 215 ..........desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 ++ + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++ Sme2.5_00779.1_g00015.1 298 sndtasssplCST----GssKMDCFLNALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKM 379 *999875443333....2346799************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 llg+ei++++aceg er+erhe+le+W +r++++GF++vpls++a qa++ll+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr Sme2.5_00779.1_g00015.1 380 LLGEEIKSIIACEGIERKERHEKLERWFQRFDTSGFGNVPLSYYALLQARRLLQSYSCEGYKIKEENGCVVICWQDRALFSVSSWR 465 *************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.983 | 21 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-140 | 47 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPLEAFP MMSASPSFGS SNPWLKELKS EERGLYLIHL LLACANHVAS 60 GSLENANIAL DHISQLASPS GDTMQRIASY FNEALADRIL RSWPGLYKAL RSTKLSVVSE 120 EILVRKMFFE IFPFLKVAFV VSNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP 180 EGPPHLRITG VHQQKEVLDQ MAHVLIQEAE KLDIPFQFNQ VVSKLENLDV ERLRVKTGEA 240 LAISSVMQLH TLLAHENEKK SSLPFKHSNG VGLHRALVNQ KTLGEFPEKD IANCCSTSND 300 TASSSPLCST GSSKMDCFLN ALWGLSPKVM VVTEQDSNHN GTTLMERLSE SLHFYAALFD 360 CLESTLPRTS LERLKVEKML LGEEIKSIIA CEGIERKERH EKLERWFQRF DTSGFGNVPL 420 SYYALLQARR LLQSYSCEGY KIKEENGCVV ICWQDRALFS VSSWRCRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-41 | 35 | 467 | 7 | 381 | Protein SCARECROW |
5b3h_A | 9e-41 | 35 | 467 | 6 | 380 | Protein SCARECROW |
5b3h_D | 9e-41 | 35 | 467 | 6 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349782.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | M1A099 | 0.0 | M1A099_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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