PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00766.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 201aa    MW: 21714.9 Da    PI: 10.4374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00766.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-083876947
                             HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Sme2.5_00766.1_g00005.1 38 NRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 76
                             568899999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.32E-113782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-63775IPR009057Homeodomain-like
CDDcd001675.26E-63777No hitNo description
TIGRFAMsTIGR015577.1E-123779IPR006447Myb domain, plants
PfamPF002491.4E-63876IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MIIRFGFLQE DNCIESIGAK TVELTINLIV LYLRGFENRL FLLGLDKYGK GDWRSISRNF  60
VVTRTPTQVA SHAQKYFIRL NSMNRDRRRS SIHDITSVNT GEVSVPQGLI TGQTNCSAAG  120
NSSSKQSKQQ TPLPAAPPGV SIYGATSIGQ PIGGPFVSAV GTPVNVPPPT HMAYGVRPPI  180
PGAVVPGAPM TYPMPHTSMH R
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613368.12e-98PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN66e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2G3D2946e-97A0A2G3D294_CAPCH; Protein RADIALIS-like 6
STRINGXP_009613368.17e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-59MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]