PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00720.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 305aa MW: 33223.5 Da PI: 9.6107 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.7 | 5.3e-38 | 37 | 93 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Sme2.5_00720.1_g00003.1 37 PQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93 689**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.863 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-24 | 39 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEEQLGGRSS GENDRNQQQR RMKMPENMTS APPQPPPQKC PRCDSNNTKF CYYNNYSLTQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTMKGGGLS SSAGESSSRS HHHHHQVLQS 120 PPIANLSTAT FFSGNNSRSQ PLPMSSLYTG GGGGLLSSLA AMQSMSQLSQ SIINQSPLGV 180 ISGSNNNNNN QLIGNFNIPT STSPKVPMNQ QLENTGFYQM VNSEKPNMES SFYPSDQTLQ 240 FQPTRPLGSW TQRFINSNNN NNNNIWPNSS ADNSSSGGAN DSTTADVASL SPNQWPDLPG 300 FGPSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025885168.1 | 1e-118 | dof zinc finger protein DOF5.3-like | ||||
Refseq | XP_025885169.1 | 1e-118 | dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A3Q7FQM1 | 1e-117 | A0A3Q7FQM1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077960.1.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 7e-33 | TARGET OF MONOPTEROS 6 |