PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00720.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 391aa MW: 42895.4 Da PI: 7.4458

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00720.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Sme2.5_00720.1_g00002.1 53 QQQHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 113 6899******************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	52	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MVGECEKMVL ISSSTTNQIW PQIDEKNNLT MAANGTINTT RDMEKPIQDP SQQQQHLKCP 60 RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RIKRSSANSS 120 SSTTTTTISH DIITTSTPNA NPSHHHQLHG VHNSNIDHLS TTNSPSHLNS LFYGLTNERS 180 DLNIPFARLF NSRVSSHAGG VDEGQVYSLT DGIAGLMDRR IGLGFSNSSG GVVSMGENNN 240 YGHGGFNPIK QIQDVHVMSN SNCTTSTTSL LSSYPNMFGS SPSTSTMASL IASSLQQQKF 300 MSNIHGNTFH NLLAPNYEEL QMSRGDNNNN DNSTLHEGGE NGITMLKEEK MDLSNQQIHE 360 QIINSSDPSL SWNGAWLDPS NMGSNSVPSL I

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MVGECEKMVL ISSSTTNQIW PQIDEKNNLT MAANGTINTT RDMEKPIQDP SQQQQHLKCP  60
RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RIKRSSANSS  120
SSTTTTTISH DIITTSTPNA NPSHHHQLHG VHNSNIDHLS TTNSPSHLNS LFYGLTNERS  180
DLNIPFARLF NSRVSSHAGG VDEGQVYSLT DGIAGLMDRR IGLGFSNSSG GVVSMGENNN  240
YGHGGFNPIK QIQDVHVMSN SNCTTSTTSL LSSYPNMFGS SPSTSTMASL IASSLQQQKF  300
MSNIHGNTFH NLLAPNYEEL QMSRGDNNNN DNSTLHEGGE NGITMLKEEK MDLSNQQIHE  360
QIINSSDPSL SWNGAWLDPS NMGSNSVPSL I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063472.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	M1CWS8	0.0	M1CWS8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400076447	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-35	Dof family protein