PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00676.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 390aa    MW: 43566.8 Da    PI: 8.5374
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00676.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.62.2e-2376120145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRC ++++ ++k+CErH+hrgr+rsrk++e+
  Sme2.5_00676.1_g00016.1  76 DPEPGRCRRTDGKKWRCAKDAYLDSKYCERHMHRGRNRSRKHVES 120
                              79****************************************986 PP
2QLQ643.9e-221550237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             +FTa Q+q+L++Q+++yKyL+a++PvP++L+++i++
  Sme2.5_00676.1_g00016.1 15 PFTAVQWQELEHQAMIYKYLVAGVPVPADLVVPIRR 50
                             9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-121450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4161550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-161549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.78376120IPR014977WRC domain
PfamPF088791.9E-1977119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSTAAETVAE GYRTPFTAVQ WQELEHQAMI YKYLVAGVPV PADLVVPIRR SFEPISARFC  60
HHPSLGYYSY YGKKFDPEPG RCRRTDGKKW RCAKDAYLDS KYCERHMHRG RNRSRKHVES  120
QSTAPSLLTS VSHNTTGSSK TSGNFQRSSS GSFQNTPLYS AANSEGPSYG SATTKMQTEP  180
TTYAIDFKGY GYFHGMASDE QNFSFEASAG TTSLGMGSNT DSMWCLMPPQ LPSNPMVKPK  240
NDSQLPDSSQ PIRMTNPFEP MNDATISGQQ HQHCFFGSDI GSPGTVKQEQ RSMRPFFDEW  300
PTTKESWSNL DDDGSNKNNF CTPQLSISIP MTPPDFSSRS SCSPNGVSGA ALSRQILIST  360
SRWIEPWPRM SKLPRKLHEN ILVPLHVFMV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-178HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253086.10.0growth-regulating factor 4 isoform X1
TrEMBLA0A3Q7JCL00.0A0A3Q7JCL0_SOLLC; Uncharacterized protein
STRINGSolyc12g096070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-44growth-regulating factor 5