PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00675.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 332aa    MW: 37103.4 Da    PI: 6.0566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00675.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd  lv +v+q+G+g+W++ + + g++R+ k+c++rw +yl
  Sme2.5_00675.1_g00011.1 14 KGPWTPEEDIMLVSYVQQHGPGNWRALPTKTGLRRCSKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding49.31.1e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sme2.5_00675.1_g00011.1  67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.541961IPR017930Myb domain
SuperFamilySSF466899.18E-3111108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002496.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241568IPR009057Homeodomain-like
CDDcd001675.55E-111661No hitNo description
PROSITE profilePS5129424.54762116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002499.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2569117IPR009057Homeodomain-like
CDDcd001678.51E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRVPCCDKL GVKKGPWTPE EDIMLVSYVQ QHGPGNWRAL PTKTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLD  120
QLHQCPGSDD LFCVENGVTH LSSSNASTSR GQWERTLQCD INMAKKALHN ALSLESSTSP  180
HNNIKQENNP QVSSTTYASS TENIARLLQG WMRSTSQSSK TSSNNIAATD SSSCDGTPNA  240
DSKGGMGVTE AFESLFGLES FESSSSDEMS EIGTASPKAE VTKVEIKKEE NEEHDEEVPL  300
SVILENWLLD ENTLNIQHKH DLTTFSFDET PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-26141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX991340.0X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559048.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-101MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2G2XD470.0A0A2G2XD47_CAPBA; Myb-related protein
STRINGSolyc02g067340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-91myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]