PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00669.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 504aa MW: 54727 Da PI: 5.7354

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00669.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	157	217	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sme2.5_00669.1_g00003.1 157 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 217 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	154	214	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-32	159	215	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	161	215	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	163	199	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MRQVKDPEIK LFGKKIALPE SGKILPVIVL GEDSDVGKSV SATDVVVAEE SSTGSDRDPC 60 LVDKEGNSSQ QDESDDGSEY EKEEADKDQM TRELSEAKLQ EKDQNLMMEE SENLKSPSED 120 KPKAHTIDDD SPTVKTSKTE DDQNDATNSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN 180 INQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDSPNGF 240 HHPAFKPNGT VLSFGPDSPL CDSMASVLNL ADNKTPNGIR NGFYRPEHKN PSGIGGENGD 300 DCSSGSSVTT SNSMGEGVKN CSPEAVMQTI NGFPSPVPCL PGVPWPVPFA AVPFPAISPA 360 GYPMPFCPPP YWNYNVPGPW SLPWLTPPSP TANQKGPGSG PNSPLGKHSR DGELLKPTNP 420 ECQKNSEGSV LVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKKDQP 480 TTTSPALQAN PAAFSRSLSF QERV

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MRQVKDPEIK LFGKKIALPE SGKILPVIVL GEDSDVGKSV SATDVVVAEE SSTGSDRDPC  60
LVDKEGNSSQ QDESDDGSEY EKEEADKDQM TRELSEAKLQ EKDQNLMMEE SENLKSPSED  120
KPKAHTIDDD SPTVKTSKTE DDQNDATNSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN  180
INQPRHFCKS CQRYWTAGGT MRNVPVGAGR RKNKNSASHC RHIMISEALE AARIDSPNGF  240
HHPAFKPNGT VLSFGPDSPL CDSMASVLNL ADNKTPNGIR NGFYRPEHKN PSGIGGENGD  300
DCSSGSSVTT SNSMGEGVKN CSPEAVMQTI NGFPSPVPCL PGVPWPVPFA AVPFPAISPA  360
GYPMPFCPPP YWNYNVPGPW SLPWLTPPSP TANQKGPGSG PNSPLGKHSR DGELLKPTNP  420
ECQKNSEGSV LVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSSEKKDQP  480
TTTSPALQAN PAAFSRSLSF QERV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364590.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	M1BQ21	0.0	M1BQ21_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-84	cycling DOF factor 3