PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00636.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 615aa    MW: 68910.8 Da    PI: 6.5571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00636.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2058113156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+  qVk+WFqN+R+++k
  Sme2.5_00636.1_g00006.1  58 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 113
                              688999***********************************************998 PP
2START212.91.2e-662514721206
                              HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              ela +a++el+++a+ +ep+W   s       +n++e+ ++f+++ +      ++ea+r+s+vv+ + ++lve+l+d++ qW+  +
  Sme2.5_00636.1_g00006.1 251 ELAVAAMEELIRLAQTGEPLWINHSsennnVALNEEEYARTFPRGIGpkslgLKSEASRESAVVIINYVNLVEILMDVN-QWTSFF 335
                              57899*****************99999999999***********999********************************.****** PP

                              S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                    START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151
                              +    ka++lev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++     sv R++++pSg
  Sme2.5_00636.1_g00006.1 336 TgivsKATILEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGSWAVVDVSLDNLRSS----SVSRCRRRPSG 417
                              *******************************************************************9985....58********* PP

                              EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +li++++ng+skvtw+ehv++++r +h+++r+lv sgla+gak+wvatl+rqce+
  Sme2.5_00636.1_g00006.1 418 CLIQELPNGYSKVTWIEHVEVDDRAVHSIYRPLVDSGLAFGAKRWVATLERQCER 472
                              *****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-1943115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2146117IPR009057Homeodomain-like
PROSITE profilePS5007116.64955115IPR001356Homeobox domain
SMARTSM003893.6E-1857119IPR001356Homeobox domain
PfamPF000466.5E-1858113IPR001356Homeobox domain
CDDcd000862.10E-1758116No hitNo description
PROSITE profilePS5084848.225242475IPR002913START domain
SuperFamilySSF559615.92E-41242474No hitNo description
CDDcd088753.16E-120246471No hitNo description
SMARTSM002341.6E-65251472IPR002913START domain
PfamPF018522.5E-56252472IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-6312472IPR023393START-like domain
SuperFamilySSF559611.54E-12490606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFETKSGTD IMEAPSGDDQ DPNKRPKKKQ  60
YHRHTQHQIQ ELESFFKECP HPDDKQRKDL GKRLGLEPLQ VKFWFQNKRT QMKSQHERHE  120
NTQLRNENDK LRAENIRYKE ALTTATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLNYPQLPS FGPPNRSSLE IGIAAANLGH PLGEMYANTS AGDLLRSISG  240
PTDADKPIII ELAVAAMEEL IRLAQTGEPL WINHSSENNN VALNEEEYAR TFPRGIGPKS  300
LGLKSEASRE SAVVIINYVN LVEILMDVNQ WTSFFTGIVS KATILEVLST GVAGNYNGAL  360
QVMTAEFQVP SPLVPTRENY FVRYCKQHGD GSWAVVDVSL DNLRSSSVSR CRRRPSGCLI  420
QELPNGYSKV TWIEHVEVDD RAVHSIYRPL VDSGLAFGAK RWVATLERQC ERLASVMASN  480
IPTGDVITSP EGRKSMLKLA ERMVMSFCAG VGASTAHTWT TLSGSGADDV RVMTRKSIDD  540
PGRPPGIVLS AATSFWMPVT TKRVFDFLRD ENSRNEWDIL SNGGLVQEMA HIANGRDSGN  600
SVSLLRVNEC EHHRH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545426.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
RefseqXP_016545427.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A1U8EDY40.0A0A1U8EDY4_CAPAN; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A2G2YJM00.0A0A2G2YJM0_CAPAN; homeobox-leucine zipper protein MERISTEM L1
STRINGSolyc10g005330.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]