PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00622.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | SBP | ||||||||
Protein Properties | Length: 374aa MW: 40086.9 Da PI: 8.5678 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135 | 2.4e-42 | 75 | 150 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa hnerrrk+ Sme2.5_00622.1_g00022.1 75 RCQVEGCQADLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLACHNERRRKP 150 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-36 | 69 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.103 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-39 | 74 | 153 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-31 | 76 | 149 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MELGSVSSSG NSSSSDSLNG LKFGKKIYFG NVGVGVQPKN GTGSSPVTGD GNLPPAPATS 60 KRGRAGLVQG GQPPRCQVEG CQADLSDAKA YYSRHKVCGM HSKSPTVIVA GLEQRFCQQC 120 SRFHQLPEFD QGKRSCRRRL ACHNERRRKP PSGSLFSTHY GNLSSSIFEN NSSRSGSFLV 180 DFSSHQNVNE SSWPNTRASE QGWDHQSTAS GKFLQRPWLN NSENAASDLV LQGSSSRTSY 240 PGVPSGDYIP AVSDSSGALS LLSNRSWGSR NRPSSLEVNS QVHIDGVHTI QPSGSHGAPT 300 NHFSSPSLGF KGNEASSSSH EMPPDLGLGQ MLQDSGNPYC GELGMAQHGD GRPYMELDQS 360 KGYHSSVQNV HWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-30 | 76 | 149 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244580 | 0.0 | AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362236.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | M1ATC3 | 0.0 | M1ATC3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400029751 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4571 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 1e-48 | squamosa promoter binding protein-like 15 |