PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00610.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 331aa    MW: 38674.6 Da    PI: 4.3608
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00610.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix401e-1295180286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W+++e  +L+e+  e+  +l+r++ ++ +W ev++k+ +  g  rs ++C++ ++ l+k+ykk+ + ++k   e +s++ +f++++
  Sme2.5_00610.1_g00007.1  95 WSEEESFVLLEVWGERYLELGRRSIRAEDWGEVAEKVtEMIGADRSEVECRNQLDILKKKYKKEITKMEKTGGEFHSKWTFFKKMD 180
                              *************************************556799********************99988888899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.00592147IPR017877Myb-like domain
PfamPF138379.6E-1893182No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNDSDDETPY PSRPIYTSSR RSIRNPSSYP RNTHYGYNNN EFQYYDDDND ESDDEEENQE  60
FSSGEYEYEG KKKRKLDTFV ANYEFAPRPG SKEMWSEEES FVLLEVWGER YLELGRRSIR  120
AEDWGEVAEK VTEMIGADRS EVECRNQLDI LKKKYKKEIT KMEKTGGEFH SKWTFFKKMD  180
MLMNLRMKGH CGLGCGLDSG EYVFMDPRMY LDRSNVLDEM RDSPAGSDAG NDEEEGSGGL  240
GVDDESAKLL VGSIQRFGQI YEKIEISKRK QMMELEKMRR DFQKELELQK KLIVERAQEE  300
IAKIRDNDND DDNEDEDVEE TDNVSGEKLR G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574195.11e-170PREDICTED: uncharacterized protein LOC107871832
TrEMBLA0A2G2WS771e-176A0A2G2WS77_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000705931e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-67Trihelix family protein