PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00591.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 360aa    MW: 41305.4 Da    PI: 7.2659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00591.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-0894139346
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                               WT+eE +++  a++ +  +   +W ++a+ ++ g++  ++ + +  
  Sme2.5_00591.1_g00006.1  94 EWTKEENKKFESAIAIYDENtpnRWFKVAELIP-GKSVIDVMNQYKE 139
                              6******************9*************.*******999975 PP
2Myb_DNA-binding45.51.8e-14192236347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ +++ + +++G+g+W+ I+++m   Rt+ q+ s+ qky
  Sme2.5_00591.1_g00006.1 192 PWTEEEHRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 236
                              8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-589140IPR009057Homeodomain-like
PROSITE profilePS512937.67390144IPR017884SANT domain
SMARTSM007172.7E-1191143IPR001005SANT/Myb domain
SuperFamilySSF466893.88E-1293148IPR009057Homeodomain-like
PfamPF002492.6E-694139IPR001005SANT/Myb domain
CDDcd001676.78E-894141No hitNo description
Gene3DG3DSA:1.10.10.603.7E-13183242IPR009057Homeodomain-like
PROSITE profilePS5129421.135185241IPR017930Myb domain
SuperFamilySSF466892.66E-16187240IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-18188240IPR006447Myb domain, plants
SMARTSM007176.8E-13189239IPR001005SANT/Myb domain
CDDcd001679.16E-10192236No hitNo description
PfamPF002498.3E-13192236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDLELPLPL LAPVARNQST IFRVGWGNGI DATCGEQVNV KELSRGCRGV RFGFGGLVFW  60
LLSFSGVWFW LWKEEEEKEK REGERGGVEK NGREWTKEEN KKFESAIAIY DENTPNRWFK  120
VAELIPGKSV IDVMNQYKEL VADVCDIEAG LVPNPGYFTS SITLQLVDHC GLQTFRKKRT  180
KSSDQERKKG VPWTEEEHRR FLMGLEKYGK GDWRNISKKM VISRTPTQVA SHAQKYYQRQ  240
LSGGKDKRRP SIHDITTVHF PADATSQNNI VYNINSLSKE KYYATTSPSF QKFTTRTDIV  300
NCWNSSLPSD HEDMMDFGSS FVAYPYEIAS QSWDEHGADD ISISANSHLQ FQSTRYHIWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1491165781RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176188KKRTKSSDQERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564871.11e-170PREDICTED: transcription factor DIVARICATA-like isoform X1
TrEMBLA0A1U8G0H11e-168A0A1U8G0H1_CAPAN; Transcription factor DIVARICATA
TrEMBLA0A2G2ZWT71e-168A0A2G2ZWT7_CAPAN; transcription factor DIVARICATA-like isoform X1
STRINGSolyc03g096350.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.29e-78MYB family protein