PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00584.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 204aa    MW: 24031.2 Da    PI: 9.9722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00584.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-072367345
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              WT+eE +++  a + +      +W+++a+ ++ g++  ++ + + 
  Sme2.5_00584.1_g00015.1 23 EWTKEENKKFESALAIYDEMtpnRWSKVAEIIP-GKSVLDVMLQYK 67
                             7****************9669999*********.****99999886 PP
2Myb_DNA-binding41.92.3e-13120164347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  Sme2.5_00584.1_g00015.1 120 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 164
                              8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0671974IPR017884SANT domain
SMARTSM007173.9E-92072IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-112277IPR009057Homeodomain-like
PfamPF002492.0E-62368IPR001005SANT/Myb domain
CDDcd001671.34E-72370No hitNo description
Gene3DG3DSA:1.10.10.609.9E-52367IPR009057Homeodomain-like
PROSITE profilePS5129420.218113169IPR017930Myb domain
SuperFamilySSF466891.22E-16115168IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18116168IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.0E-12117164IPR009057Homeodomain-like
SMARTSM007171.2E-11117167IPR001005SANT/Myb domain
PfamPF002491.5E-11120164IPR001005SANT/Myb domain
CDDcd001671.24E-8120164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
METLYPTSFV PNLNWMRKST TTEWTKEENK KFESALAIYD EMTPNRWSKV AEIIPGKSVL  60
DVMLQYKELV ADVTDIEAGL VPNPRHFASS FALEYVDHRK IQTFSKRGKS YDHERKKGVP  120
WTEEEHRRFL MGLEKYGKGD WRNISRNFVI SKTPTQVASH AQKYYLRQLS KEKERKRPSI  180
HDITTIHLTN NENNNNNNNP SWIK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-118HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355655.11e-122PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015075141.11e-122transcription factor DIVARICATA-like
RefseqXP_015167947.11e-122PREDICTED: transcription factor DIVARICATA-like
RefseqXP_015167948.11e-122PREDICTED: transcription factor DIVARICATA-like
RefseqXP_027772785.11e-122transcription factor DIVARICATA-like
SwissprotQ8S9H75e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0V0I0R11e-121A0A0V0I0R1_SOLCH; Putative transcription factor DIVARICATA-like
STRINGPGSC0003DMT4000697531e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-67Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]