PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00581.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 455aa MW: 50090.5 Da PI: 6.5722 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 142 | 191 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sme2.5_00581.1_g00007.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-16 | 142 | 201 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 142 | 191 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.66E-12 | 143 | 201 | No hit | No description |
PROSITE profile | PS51032 | 17.82 | 143 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-17 | 143 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-32 | 143 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.09E-13 | 234 | 279 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-6 | 234 | 279 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-13 | 235 | 283 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence Send to blast |
MFDLNLGIEE DAMETVTTSE KVKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDH 60 RTDGYAFDIL RADFEVNEFV TKELFPLTGG ESAPPLSQQQ QQWLDLSGNY GGFPMEQRII 120 VAPPQQRQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAAIKFR GLDADINFNV SDYHDELKQM ASFSKEEFVH ILRRQSTGFS RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFDLST YEDELSIEAD NGGADHNLDL 300 NLGIAPSVLA NDQLGNTCQM GDYVVQCASN GLPGYRGAVQ SPSTAMGSKL PHGHQLLTDR 360 PLLWNGVNTS IFPTLKGTAL GKIIEVDSSP NWTQQDQHPY SGSPSVPLFS TAASSGFANS 420 TTAAAHLPRF STGPLPYQHS PSLANTNFGH YYCRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FM246879 | 0.0 | FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246701.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | Q9SK03 | 5e-91 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | C7BWK6 | 0.0 | C7BWK6_SOLTU; Relative to APETALA2 1 | ||||
STRING | Solyc09g007260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.2 | 2e-92 | related to AP2.7 |