PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00557.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 29409.6 Da PI: 6.1392 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 140 | 6.1e-44 | 140 | 233 | 7 | 100 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ++++e++tdfkn+elP++rikki+k+d+dv+m+s+e+P+ll+kacelfi +lt rswlhae+n+rrtlkk+d+++a+ +tdifdfl Sme2.5_00557.1_g00010.1 140 QQEMEQVTDFKNNELPITRIKKIIKSDKDVRMVSTESPILLAKACELFIQDLTRRSWLHAEKNQRRTLKKTDVTTAIMETDIFDFL 225 456*********************************************************************************** PP NF-YC 93 vdivprde 100 +divp d+ Sme2.5_00557.1_g00010.1 226 LDIVPGDD 233 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.27E-26 | 139 | 225 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-19 | 153 | 216 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-31 | 154 | 230 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMLLLLMAPC QLSVVPFYAA GGSNGQDNLD CQRTKLRFKC VSGILVIVWG NSGDIDDDVT 60 HRIGAAWTKW RLACGVLCDK KIANQKCTCP EDACCRDEDV KMDVWSHQER QGQSAENPTR 120 AQHLLEKKEE QWKMLLASQQ QEMEQVTDFK NNELPITRIK KIIKSDKDVR MVSTESPILL 180 AKACELFIQD LTRRSWLHAE KNQRRTLKKT DVTTAIMETD IFDFLLDIVP GDDATGGSTP 240 SFLPFYAAGG SSGPDNLDRQ R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-37 | 138 | 230 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022736089.1 | 2e-48 | nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | M1B8B7 | 2e-46 | M1B8B7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039471 | 3e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12872 | 5 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-45 | nuclear factor Y, subunit C1 |