PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00547.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 513aa    MW: 56190.7 Da    PI: 8.8965
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00547.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.1e-40221298178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +CqvegC+ dls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefDe+krsCrrrL++hn+rrrk+++
  Sme2.5_00547.1_g00002.1 221 RCQVEGCNLDLSSAKEYYRKHRVCDSHSKSPKVIVAGVARRFCQQCSRFHSVSEFDEKKRSCRRRLSDHNARRRKPHQ 298
                              6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-33216283IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.932219296IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-38220301IPR004333Transcription factor, SBP-box
PfamPF031102.7E-31222295IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MLRRQANDTV SLLGCLASID PSSNYFITFH ESGDLVKPSH SFFPKMEWNV KWDWGNLVMF  60
GSKTSESPKE LQLTDWGVEE EGELDGGSFN LSSGGSGTGG YGSDVKCGSS IKSSISASTD  120
SSPKEGFKAV NFAFEAFNAS REDPSKTLEL SKAEVSRNSP PMEASVGSVE PVIGLKIGKR  180
TCETIGVGSS AKVSSFPLHP TSSAAATKKA KSSIQNAPIP RCQVEGCNLD LSSAKEYYRK  240
HRVCDSHSKS PKVIVAGVAR RFCQQCSRFH SVSEFDEKKR SCRRRLSDHN ARRRKPHQET  300
IQFNSARLSS LFYDNKQPMN LVLNQPQLIH SRAAANYTWE STQDSKFSIT RGFTPKPERA  360
GSTNGKSLLE GIQFSRPMGA QSNASSLLFP SKGTTAEVFH RGSKESTFNM VTGPEFPRAL  420
SLLSTNSWGS SEPETVSLNH ANHSSIPEQM MQAIPQGVPH LSSQYWQAGQ HSSDPRYHIL  480
PANSHSGGSF QEMGLFKAPF DTDYYLNALN SNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-252222951184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277294KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352180.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352181.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_006352182.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015166302.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLM1D7X70.0M1D7X7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000847340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-60squamosa promoter binding protein-like 2